Locus 1582

Sequence ID 3R_DroMel_CAF1
Location 4,531,704 – 4,531,805
Length 101
Max. P 0.982214
window2612

overview

Window 2

Location 4,531,704 – 4,531,805
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 90.79
Mean single sequence MFE -25.68
Consensus MFE -19.64
Energy contribution -19.88
Covariance contribution 0.24
Combinations/Pair 1.14
Mean z-score -2.88
Structure conservation index 0.76
SVM decision value 1.91
SVM RNA-class probability 0.982214
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4531704 101 - 27905053
CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGUCUUUGCGAAUCAACCAAAUAAUGCACCUGGGAAAAUAGGUAUUACAUAUAGAAAAUUUA
(((.((((((....(((((((((((.......)))))))))))...))))))..............(((((......)))))........)))........ ( -26.10)
>DroSec_CAF1 31650 100 - 1
CUACGU-CGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGCCUUUGCGAAUCAACCAAAUAAUGCACCUGGGAAAAUGGGCAUUUCAUUUAGAAAAUAUA
(((..(-(((....(..((((((((.......))))))))..)...))))...........(((((.((.........))))))).....)))........ ( -20.60)
>DroSim_CAF1 22739 101 - 1
CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGUCUUUGCGAAUCAACCAAAUAAUGCACCUGGGAAAAUGGGCAUUUCAUUUAGAAAAUAUA
(((.((((((....(((((((((((.......)))))))))))...)))))).........(((((.((.........))))))).....)))........ ( -27.10)
>DroEre_CAF1 33477 101 - 1
CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGUCUUUGGGAAUCAACCAAAUGCUGCACCUAAAAAAAUGGGUAUUUCAUUUAGAAAAUGAA
.....((((((((.(.(((.....))).))))))))).((((.(((((.......))))).)))).(((((......)))))..((((((.....)))))) ( -25.70)
>DroYak_CAF1 32412 101 - 1
CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAAUCUUUGGGAAUCAACCAAAUGCUGCACCUAGAAAAAUGGGUUCUGCAUUUCGAAAAUGAA
....((((.(....(((((((((((.......)))))))))))...).))))...(.((((((.(.(((((......))))).).)))))).)........ ( -28.90)
>consensus
CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGUCUUUGCGAAUCAACCAAAUAAUGCACCUGGGAAAAUGGGUAUUUCAUUUAGAAAAUAUA
....((((((....(((((((((((.......)))))))))))...))))))...............((((......)))).................... (-19.64 = -19.88 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:07 2006