Locus 1581

Sequence ID 3R_DroMel_CAF1
Location 4,525,061 – 4,525,152
Length 91
Max. P 0.573284
window2611

overview

Window 1

Location 4,525,061 – 4,525,152
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 76.75
Mean single sequence MFE -27.93
Consensus MFE -17.53
Energy contribution -18.62
Covariance contribution 1.09
Combinations/Pair 1.15
Mean z-score -1.30
Structure conservation index 0.63
SVM decision value 0.08
SVM RNA-class probability 0.573284
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4525061 91 - 27905053
CCUCCGGAUCAGCGGCGCUGAUCCUGCGUGAUCCU---GCGUACUGCGUAAUGUUGGAUUAUGUCCUGUGC--AGAAG--UACG----GCCAACUUUUAAAU
.....((((((((...)))))))).(((((((((.---((((........)))).))))))))).((((((--....)--))))----)............. ( -31.70)
>DroVir_CAF1 32004 81 - 1
---CAGGAUCAGAGUCGCUGAUCCU---UGAUCCUGCUGCAUGCUGCGUAAUGUUGGAUUAUGCA---------GUCG------CCUAGCCAAAAUUUAAAU
---.((((((((.....))))))))---.......((((..(((((((((((.....))))))))---------).))------..))))............ ( -26.00)
>DroSec_CAF1 24889 97 - 1
CCUCCGGAUCAGCGGCGCUGAUCCUGCGUGAUCCU---GCGUACUGCGUAAUGUUGGAUUAUGUCCUGUGCGAAGAGG--UACGGCUGGCCAACUUUUAAAU
((((.((((((((...)))))))).(((((((((.---((((........)))).)))))))))..........))))--...((....))........... ( -32.80)
>DroEre_CAF1 25507 97 - 1
CCUCCGGAUCAACGGCGCUGAUCCUGCGUGAUCCU---GGGUACUGCGUAAUGUUGGAUUAUGUCCUGUGC--AGCCGUGUACGGCUGGCCAACUUUUAAAU
.....(((((....((((.......)))))))))(---((((((.(((((((.....)))))))...))))--(((((....)))))..))).......... ( -30.10)
>DroYak_CAF1 25259 95 - 1
CCUCCGGAUCAACGGCGCUGAUCCUGCGUGAUCCU---GGGUACUGCGUAAUGUUGGAUUAUGUCCUGUGC--AGCCG--UACGGCGGGCCAACUUUUAAAU
((.(((((((....((((.......))))))))).---))((((.(((((((.....)))))))...))))--.(((.--...))))).............. ( -27.30)
>DroAna_CAF1 24111 73 - 1
CCUCCGGAUCAACGCCGUUGAUCCCCGAUGAUCCU---GCGUACUGCGUAAUGUUGGAUUAUG--------------------------CCAAAAUUUAAAU
.....((((((((...))))))))...(((((((.---((((........)))).))))))).--------------------------............. ( -19.70)
>consensus
CCUCCGGAUCAACGGCGCUGAUCCUGCGUGAUCCU___GCGUACUGCGUAAUGUUGGAUUAUGUCCUGUGC__AGACG__UACGGCUGGCCAACUUUUAAAU
.....(((((((.....))))))).(((((((((....((((........)))).)))))))))...................................... (-17.53 = -18.62 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:06 2006