Locus 1580

Sequence ID 3R_DroMel_CAF1
Location 4,522,560 – 4,522,665
Length 105
Max. P 0.517639
window2610

overview

Window 0

Location 4,522,560 – 4,522,665
Length 105
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 86.64
Mean single sequence MFE -12.23
Consensus MFE -8.23
Energy contribution -8.10
Covariance contribution -0.13
Combinations/Pair 1.17
Mean z-score -1.51
Structure conservation index 0.67
SVM decision value -0.03
SVM RNA-class probability 0.517639
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4522560 105 - 27905053
AUUAAUUCAUGCUAAUCUGAUGACUGAUAACCAAUUUGCUUAUUCUAUGUCAUAAUCACCUUUAAUCCCAAGUACUCAACUUUCUUCUAGU-UCUGCACAUUUUCU
.........(((....((((((((.(((((.(.....).)))))....)))))................((((.....)))).....))).-...)))........ (  -8.60)
>DroSec_CAF1 22378 106 - 1
AUUUAUUCAGGCUAAUCUGAUGACUGAUAAGCAUUUUGCUUAUUCUCUGUUAUAAUCACCUUUAAUCCCAAGUACUCAACUUUCUUCUAGUUUCUGCACUUCUGCC
.........(((.......(((((.(((((((.....)))))))....)))))..................(((...((((.......))))..)))......))) ( -14.50)
>DroEre_CAF1 23137 98 - 1
AUUUAUGUAGUCUAAUCUGAUGACUGAUAAGCAUUUCGCUUAUUCUUUGUUAUAAUCACCUUUAAUCCCAACUACUCAACUUUCUUCUACUUUC--------UGUC
......(((((......(((..(..(((((((.....)))))))..)..)))(((......)))......)))))...................--------.... ( -11.60)
>DroYak_CAF1 22812 106 - 1
AUUUAUUCAGGCUAAUCUGAUAACUGAUAAGCAUUUUGCUUAUUCUUGGUUAUAAUCACCUUUAAUCCCAAGUACUCAACUUUCUUCUACUUUCUGCACUUCUGCC
......(((((....))))).....(((((((.....)))))))(((((...(((......)))...))))).......................(((....))). ( -14.20)
>consensus
AUUUAUUCAGGCUAAUCUGAUGACUGAUAAGCAUUUUGCUUAUUCUUUGUUAUAAUCACCUUUAAUCCCAAGUACUCAACUUUCUUCUACUUUCUGCACUUCUGCC
...................(((((.(((((((.....)))))))....)))))..................................................... ( -8.23 =  -8.10 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:05 2006