Locus 158

Sequence ID 3R_DroMel_CAF1
Location 802,897 – 803,006
Length 109
Max. P 0.589222
window262

overview

Window 2

Location 802,897 – 803,006
Length 109
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.92
Mean single sequence MFE -40.20
Consensus MFE -31.79
Energy contribution -31.98
Covariance contribution 0.19
Combinations/Pair 1.09
Mean z-score -1.49
Structure conservation index 0.79
SVM decision value 0.11
SVM RNA-class probability 0.589222
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 802897 109 - 27905053
CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGA----GGCAGCCAACAAUAGGUGGCCAAGGCAAACUUCCUGGCACAAAGGCUGGCCUUUCAGAC-------G
..((((.((((((.(((.....))).(((....)))....)))))).((----(((((((..((.....))((((.((.......)))))).....)))).)))))))))..-------. ( -38.40)
>DroSec_CAF1 40796 109 - 1
CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGA----GGCAGCCAACAAAAGGUGGCCAAGGCAAACUUCCUGGCACAAAGACUGGCUUUUCAGAC-------G
..((((((((.((((((((.((((..(((....)))....))))....)----))).((((....(((...((....))...)))..))))....)))).))))..))))..-------. ( -34.10)
>DroEre_CAF1 24421 113 - 1
CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGCCUCCGCCUGCCAACAAAAGGUGGCCAUGGCAAACUUCCUGGCGCAAGGACUGCCUUUUCAGGC-------G
....((((((.((((((.........(((....)))....))))))))))))((((((.....((((((..(((.((((..........)).)).)).)..)))))))))))-------) ( -43.62)
>DroYak_CAF1 29995 120 - 1
CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGCCUCUGGCUGCCAACAAAAGGUGGCCAAGGCAAACUUCCUGGCAUAAAGACUGGCUUUUCAGGCAAAUUCAG
..((((((((.((((......(((..(((....))).....((((..((((.((((..((.......))..))))))))......)))))))...)))).))))..)))).......... ( -44.70)
>consensus
CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGA____GGCAGCCAACAAAAGGUGGCCAAGGCAAACUUCCUGGCACAAAGACUGGCUUUUCAGAC_______G
..((((((((.((((((((.(((...(((....))).......(((((.......)))))..))).)))).((((.((.......))))))....)))).))))..)))).......... (-31.79 = -31.98 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:17 2006