| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,521,501 – 4,521,597 |
| Length | 96 |
| Max. P | 0.767416 |
| Location | 4,521,501 – 4,521,597 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.63 |
| Mean single sequence MFE | -14.44 |
| Consensus MFE | -8.51 |
| Energy contribution | -8.87 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4521501 96 + 27905053 ---------CUAAAAAUAUCAUGAAAAUGGCAAAAAUGGAAAAAUUCGAAAACGCAGAAAAUGCGCCACACAAAAAAUGUUUUUGUUGAAAAAUC-CGU-ACAAA----AA ---------.........((((....)))).....(((((....(((((...((((.....)))).....(((((.....))))))))))...))-)))-.....----.. ( -14.00) >DroVir_CAF1 27782 88 + 1 ---------GUAAAAAU------AAAACGGCAAAAAUGGAAAAUU---CAGACGCAGAAAAUGCGCCAC--AAAAAAUGUUUUUGUUGUAAAAU--UGCAACGGCAGC-AG ---------........------.....(((.....((((...))---))...(((.....))))))..--......((((.((((((((....--)))))))).)))-). ( -17.80) >DroGri_CAF1 25682 96 + 1 ---------GUAAAAAUAUCAUGAAAAUGGCAAAAAUGGAAAAUU---CAGACGCAGAAAAUGCGCCAC--AAAAAAUGUUUUUGUUGUAAAAUUUUGCAUCAGCAGC-AG ---------..................((((.....((((...))---))...(((.....))))))).--......((((.(((.(((((....))))).))).)))-). ( -15.80) >DroWil_CAF1 18174 97 + 1 CACCAGCACGUAAAAAUAUCAUGAAAAUGGCAAAAAUGGAAAA--UCCGAAACGCAGAAAAUGCGCCAC--AAAAAAUGUUUUUGUUGAAAAAU------AGGAA----AA ...(((((....(((((((........((((.....(((....--.)))....(((.....))))))).--.....))))))))))))......------.....----.. ( -16.04) >DroMoj_CAF1 24373 94 + 1 ---------GGAAAAAUAUCAUGAAAAUGGCAAAAAUGGAAAAUU---CAGACGCAGAAAAUGCGCCAC--AAAAAAUGUUUUUGUUGUAAAUG--UGUAACGGCAGG-CG ---------.........((((....))))...............---.....(((.....)))(((((--(.....)))...((((((.....--....))))))))-). ( -13.50) >DroAna_CAF1 20833 99 + 1 ---------GUAAAAAUAUAAUGAAAAUUGCAAAAAUGGAAAAAUUCACGAACGCAGAAAAUGCGCCACA-AAAAAAUGUUUUUC-UGAAAAAUG-UCUAACAAAAAAAGA ---------.........((((....))))......((((....((((.(((((((.....))))..(((-......)))..)))-)))).....-))))........... ( -9.50) >consensus _________GUAAAAAUAUCAUGAAAAUGGCAAAAAUGGAAAAUU___CAAACGCAGAAAAUGCGCCAC__AAAAAAUGUUUUUGUUGAAAAAU__UGUAACAAAAG__AA ...........................(((((((((((..............((((.....))))............)))))))))))....................... ( -8.51 = -8.87 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:04 2006