Locus 1578

Sequence ID 3R_DroMel_CAF1
Location 4,510,291 – 4,510,388
Length 97
Max. P 0.500000
window2608

overview

Window 8

Location 4,510,291 – 4,510,388
Length 97
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 91.64
Mean single sequence MFE -17.19
Consensus MFE -12.78
Energy contribution -12.78
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.74
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4510291 97 - 27905053
CCACCAAUAAAAAGGCA-ACACUUCAUAAAAUACAUAAAAAAAAAUGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUU-UCCCCUCCGGAUCCUCGG
....((((.(((((((.-...............(((........)))(((((.........)))))))))))).))))..-......((((....)))) ( -15.50)
>DroSec_CAF1 10215 92 - 1
CCACCAAUAAAAAGGCA-ACACUUCAUAAAAA-----AAAAAUAAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUU-UCCCCGCCGGAUCCUCGG
....((((.(((((((.-...((((.......-----...........))))((((......))))))))))).))))..-......((((....)))) ( -14.17)
>DroSim_CAF1 10226 94 - 1
CCACCAAUAAAAAGGCA-ACACUUCAUAAAAAA---AAAAAAUGAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUU-UCCCCGCCGGAUCCUCGG
....((((.(((((((.-...((((((......---.....))))))(((((.........)))))))))))).))))..-......((((....)))) ( -20.00)
>DroEre_CAF1 10352 92 - 1
CCACCAAUAAAAAGGCAAACACUUCAUAAAAU------UAAAAAAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUUUUCCCCUCCGGAUCCUCG-
((.((........)).................------.........(((.((((((((((..............)))))))))).))))).......- ( -18.34)
>DroYak_CAF1 10358 92 - 1
CCACCAAUAAAAAGGCA-ACACUUCAUAAAAUG-----UAAAAAAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUUUUCCCCGCCGGAUCCUCG-
...((........(...-.).............-----.........((..((((((((((..............))))))))))..)))).......- ( -17.94)
>consensus
CCACCAAUAAAAAGGCA_ACACUUCAUAAAAU_____AAAAAAAAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUU_UCCCCGCCGGAUCCUCGG
....((((.(((((((.....((((.......................))))((((......))))))))))).))))...(((.....)))....... (-12.78 = -12.78 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:03 2006