| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,509,316 – 4,509,435 |
| Length | 119 |
| Max. P | 0.903831 |
| Location | 4,509,316 – 4,509,435 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 90.97 |
| Mean single sequence MFE | -35.36 |
| Consensus MFE | -28.46 |
| Energy contribution | -28.70 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4509316 119 - 27905053 CAGUCGAAGUAUAUACUACAUAUAUAGAGGCGAAAGGUGGUUGAGGUCCUGAGAAGGAUAUUCGAGGAGUGGGAGAAGUACGAGGCACGCCUGCAUCUCAUUUAGGGACUUCGGCAAAU ..(((...((((((.....))))))...)))........(((((((((((..(((.....)))(((..(..((....((.....))...))..)..))).....))))))))))).... ( -33.60) >DroSec_CAF1 9261 115 - 1 GAGUCGGAGUAUAUACUA--UAUGUAGAGGCGAAAGGUGGUUGAGGUCCUGAGAAGGAUAUUCGAGGAGUGGG--AGGCACGAGACACGCCUGCAUCUCAUUUAGGGACUUCGGCAAAU ..((((((((.....(((--.(((.(((.((...((((((((((((((((....))))).))).....(((..--...)))..))).))))))).)))))).)))..)))))))).... ( -36.60) >DroSim_CAF1 9295 117 - 1 GAGUCGGAGUAUAUACUA--UAUGUAGAGGCGAAAGGUGGUUGAGGUCCUGAGAAGGAUAUUCGAGGAGUGGGAGAGGUACGAGGCACGCCUGCAUCUCAUUUAGGGACUUCGGCAAAU ..((((((((.....(((--.(((.(((.((...((((((((..((((((....))))).(((........)))......)..))).))))))).)))))).)))..)))))))).... ( -34.00) >DroEre_CAF1 9398 113 - 1 GAGUCGGAGUAUAUGGCA--UA----CAGGCGAAAGGUGGUUGAGGUCCUGAGAAGGAUAUUCGAGGAGUGGGAGAGCUACCAGGCACGCCUGCAUCUCAUUUAGGGACUUCGGCAAAU ..((((((((..((((.(--(.----((((((...(((((((..(.((((..(((.....))).)))).).....))))))).....)))))).)).))))......)))))))).... ( -37.60) >DroYak_CAF1 9408 113 - 1 GAGUCGGAGUGUAUGGUA--UA----UAGGCGAAAGGUGGUUGAGGUCCUGAGAAGGAUAUUCGAGGAGUGGGAGAGGAACCAUGCACGCCUGCAUCUCAUUUAGGGACUUCGGCAAAU ..((((((((.((((..(--(.----((((((........((((((((((....))))).))))).(.((((........)))).).)))))).))..)))....).)))))))).... ( -35.00) >consensus GAGUCGGAGUAUAUACUA__UAU_UAGAGGCGAAAGGUGGUUGAGGUCCUGAGAAGGAUAUUCGAGGAGUGGGAGAGGUACGAGGCACGCCUGCAUCUCAUUUAGGGACUUCGGCAAAU ..((((((((....................(....)..........(((((((((.....)))(((..(..((.(.(........).).))..)..)))..)))))))))))))).... (-28.46 = -28.70 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:01 2006