Locus 1574

Sequence ID 3R_DroMel_CAF1
Location 4,506,081 – 4,506,178
Length 97
Max. P 0.555185
window2600

overview

Window 0

Location 4,506,081 – 4,506,178
Length 97
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 78.64
Mean single sequence MFE -31.95
Consensus MFE -13.34
Energy contribution -14.57
Covariance contribution 1.24
Combinations/Pair 1.05
Mean z-score -2.31
Structure conservation index 0.42
SVM decision value 0.04
SVM RNA-class probability 0.555185
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4506081 97 - 27905053
CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCAUAGGC-----------GACCUUUGAUCUAGCAUAUCGUUGUUGAUCAUCGACUAGGGGUUU-CCUUGGCACGAAAA
...............(((((((......((((.(((.(-----------((....(((((.((((......)))))))))))).))).))))..-...))))))).... ( -32.20)
>DroSec_CAF1 6063 97 - 1
CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCAUAGAC-----------GACCUUUGAUCUAGCAUAUCGUCGUUGAUCAUCGACUAGGGGUUU-CCUUGGCACGGAAA
..............((((((((......((((.(((.(-----------((....(((((.(((........))))))))))).))).))))..-...))))))))... ( -33.40)
>DroSim_CAF1 6064 97 - 1
CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCGUAGAC-----------GACCUUUGAUCUAGCAUAUCGUCGUUGAUCAUCGACUAGGGGUUU-CCUUGGCACGGAAA
..............((((((((......((((.(((.(-----------((....(((((.(((........))))))))))).))).))))..-...))))))))... ( -35.50)
>DroEre_CAF1 6142 106 - 1
CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCGUAGACCGGUGAUCACUGACCUAUGAUCUGGGCUAUCG---UUGAUCAUCGACUAGGGGUUUUGGUUUGCACGGAAA
..............((((((.....(..((((.(((..(((((((((.(((((((.....))))...)))---.))))))))).))).))))..).....))))))... ( -38.30)
>DroYak_CAF1 6117 106 - 1
CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCGUAGACCGGUGAUCACUGACCUUUGAUCUGGGCUAUCG---UUGAUCAUCGACUAAGGGUUUUGGUUUGCACGGAAA
..............((((((.....(..((((.(((..(((((((((.((((((.......)))...)))---.))))))))).))).))))..).....))))))... ( -35.40)
>DroAna_CAF1 4392 80 - 1
CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCUUUGACCG-----------------------UCCAU---CGUUGAUCAUCGGCUAGGGGUUU-GG--AGGAAAAAAA
..............((...(((......((((((.(.(((-----------------------...((---(...)))...)))).)))))).)-))--.))....... ( -16.90)
>consensus
CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCGUAGAC___________GACCUUUGAUCUAGCAUAUCG_CGUUGAUCAUCGACUAGGGGUUU_CCUUGGCACGGAAA
..............((((((........((((.(((....................(((.......)))....(((.....)))))).))))........))))))... (-13.34 = -14.57 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:55 2006