Locus 1571

Sequence ID 3R_DroMel_CAF1
Location 4,503,287 – 4,503,407
Length 120
Max. P 0.928963
window2594

overview

Window 4

Location 4,503,287 – 4,503,407
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -47.48
Consensus MFE -40.04
Energy contribution -40.64
Covariance contribution 0.60
Combinations/Pair 1.10
Mean z-score -1.73
Structure conservation index 0.84
SVM decision value 1.19
SVM RNA-class probability 0.928963
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4503287 120 - 27905053
CAUUUGGACAGCUUGGACCAGUCCAUGUCGGUGGGGGCCAGGAUGCGAGUGCCAAGGACAUGCAGCCUCGGGUCGGGAGACACAAAUAAGUCUGGAUGUGGAUUGGGUACAGCCUCCGAA
..((((((..(((.(..((((((((((((.....((.(((((.((((.((.(....))).)))).))).)).))...((((........)))).))))))))))))...)))).)))))) ( -44.20)
>DroSec_CAF1 3269 120 - 1
CAUUUGGACAGCUUGGACCAGUCCAUGUCAGUGGGGGCCAGGAUGCGAGUGCCAAGGACAUGCAGCCUCGGGUCGGGGGACACAAAUAAAUCUGGAUGUGGAUUGGGUACAGCCUCCGAA
..((((((..(((.(..((((((((((((...((((((((((.((((.((.(....))).)))).)))..)))).(....).........))).))))))))))))...)))).)))))) ( -42.60)
>DroSim_CAF1 3266 120 - 1
CAUUUGGACAGCUUGGACCAGUCCAUGUCAGUGGGGGCCAGGAUGCGAGUGCCAAGGACAUGCAGCCUCGGGUCGGGGGACACAAAUAAAUCUGGAUGUGGAUUGGGUACAGCCUCCGAA
..((((((..(((.(..((((((((((((...((((((((((.((((.((.(....))).)))).)))..)))).(....).........))).))))))))))))...)))).)))))) ( -42.60)
>DroEre_CAF1 3266 120 - 1
CAUUUGGACAGCUUGGCCCAGUCCAUGUCGGUCGGCGCCAGGAUGCGUGUGCCAAGGACAGGCAGCCUCGGGUCGAGGGACACAAAUAAGUCUGGAUGUGGAUUGGGUACAGCCUCCGAG
...(((((..(((..((((((((((((((..(((((.(((((.(((.(((.(....)))).))).))).))))))).((((........)))).))))))))))))))..))).))))). ( -56.30)
>DroYak_CAF1 3279 120 - 1
CAUUUCGACAGCUUGGCCCAGUCCAUGUCGGUAGGAGCCAGGAUGCGUGUGCCAAGGACGGGCAGCCUCGGGUCGAGGGACACAAAUAAGUCCGGAUGUGGAUUGGGUACAGCCUCCGAA
...((((...(((..((((((((((((((.....((.(((((.(((.(((.(....)))).))).))).)).))...((((........)))).))))))))))))))..)))...)))) ( -51.70)
>consensus
CAUUUGGACAGCUUGGACCAGUCCAUGUCGGUGGGGGCCAGGAUGCGAGUGCCAAGGACAUGCAGCCUCGGGUCGGGGGACACAAAUAAGUCUGGAUGUGGAUUGGGUACAGCCUCCGAA
..((((((..(((.(..((((((((((((.....((.(((((.((((.((.(....))).)))).))).)).))...((((........)))).))))))))))))...)))).)))))) (-40.04 = -40.64 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:49 2006