| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,480,411 – 4,480,503 |
| Length | 92 |
| Max. P | 0.999787 |
| Location | 4,480,411 – 4,480,503 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 87.71 |
| Mean single sequence MFE | -17.20 |
| Consensus MFE | -16.32 |
| Energy contribution | -15.72 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.95 |
| SVM decision value | 4.08 |
| SVM RNA-class probability | 0.999787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4480411 92 + 27905053 UCGAAAAGCGUACUGAACUAAAA-CCAAAGAACAGGCAA----CUUGCCAAUUCUUAUCAAUGGAGCUAACUCAAAAAGUGAUAUCAGUAAGUAAAU .......((.((((((.......-...(((((..(((..----...)))..)))))((((...(((....)))......)))).)))))).)).... ( -19.50) >DroSec_CAF1 33420 96 + 1 UAUAAAAACCUACUGAACAAAAA-ACAAAGAACAGGCAACUAACUUGCCAAUUCUUAUCAAUGGAGCUAACUCAAAAUGUGAUAUCAGUAAGUAAAU .......((.((((((.......-...(((((..(((((.....)))))..)))))((((...(((....)))......)))).)))))).)).... ( -20.60) >DroSim_CAF1 34269 97 + 1 UCGAAAAACAUACUGAACAAAAAAAAAAAGAACAGGCAACUAACUUGCCAAUUCUUAUCAAUAGAGCUAACUCAAAAUGUGAUAUCAGUAAGUAAAU .......((.((((((...........(((((..(((((.....)))))..)))))((((...(((....)))......)))).)))))).)).... ( -19.50) >DroEre_CAF1 34366 92 + 1 UCGGAAACCCUACUGAACUAAAA-ACAAAGAACAGGUAA----CUUGUCAAUUCUUAUCGAUGGAGCUAACUCAACAUGUGAUAUCAGUAAGUAAAU ..(....)..((((((.......-.....((.((((...----))))))......(((((((((((....)))..))).)))))))))))....... ( -13.60) >DroYak_CAF1 35053 92 + 1 UCGAAAACCCUACUGAACUAAAA-ACAAAGAACAGGUAA----CUCGCCAUUUCUUAUCGAUGGAGCUAAUUCAACAAAUGAUAUCAGUAAGUAAAU ..........((((((.......-...(((((..(((..----...)))..)))))...(.((((.....)))).)........))))))....... ( -12.80) >consensus UCGAAAAACCUACUGAACUAAAA_ACAAAGAACAGGCAA____CUUGCCAAUUCUUAUCAAUGGAGCUAACUCAAAAUGUGAUAUCAGUAAGUAAAU ..........((((((...........(((((..(((((.....)))))..)))))((((...(((....)))......)))).))))))....... (-16.32 = -15.72 + -0.60)
| Location | 4,480,411 – 4,480,503 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 87.71 |
| Mean single sequence MFE | -19.42 |
| Consensus MFE | -16.34 |
| Energy contribution | -17.98 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.839304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4480411 92 - 27905053 AUUUACUUACUGAUAUCACUUUUUGAGUUAGCUCCAUUGAUAAGAAUUGGCAAG----UUGCCUGUUCUUUGG-UUUUAGUUCAGUACGCUUUUCGA ...((((.(((((.((((......(((....))).......((((((.(((...----..))).)))))))))-).)))))..)))).......... ( -19.50) >DroSec_CAF1 33420 96 - 1 AUUUACUUACUGAUAUCACAUUUUGAGUUAGCUCCAUUGAUAAGAAUUGGCAAGUUAGUUGCCUGUUCUUUGU-UUUUUGUUCAGUAGGUUUUUAUA ....((((((((((((((......(((....)))...)))))(((((.(((((.....))))).)))))....-.......)))))))))....... ( -24.40) >DroSim_CAF1 34269 97 - 1 AUUUACUUACUGAUAUCACAUUUUGAGUUAGCUCUAUUGAUAAGAAUUGGCAAGUUAGUUGCCUGUUCUUUUUUUUUUUGUUCAGUAUGUUUUUCGA ....((.(((((((((((.((...(((....))).)))))))(((((.(((((.....))))).)))))............)))))).))....... ( -21.40) >DroEre_CAF1 34366 92 - 1 AUUUACUUACUGAUAUCACAUGUUGAGUUAGCUCCAUCGAUAAGAAUUGACAAG----UUACCUGUUCUUUGU-UUUUAGUUCAGUAGGGUUUCCGA .....((((((((...........(((....)))......(((((((.((((..----.....))))....))-)))))..))))))))........ ( -15.40) >DroYak_CAF1 35053 92 - 1 AUUUACUUACUGAUAUCAUUUGUUGAAUUAGCUCCAUCGAUAAGAAAUGGCGAG----UUACCUGUUCUUUGU-UUUUAGUUCAGUAGGGUUUUCGA .....((((((((...........(((((((((((.((.....))....).)))----)))...)))).....-.......))))))))........ ( -16.40) >consensus AUUUACUUACUGAUAUCACAUUUUGAGUUAGCUCCAUUGAUAAGAAUUGGCAAG____UUGCCUGUUCUUUGU_UUUUAGUUCAGUAGGGUUUUCGA .....(((((((((((((......(((....)))...)))))(((((.(((((.....))))).)))))............))))))))........ (-16.34 = -17.98 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:36 2006