Locus 1561

Sequence ID 3R_DroMel_CAF1
Location 4,478,925 – 4,479,037
Length 112
Max. P 0.736121
window2577

overview

Window 7

Location 4,478,925 – 4,479,037
Length 112
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 76.27
Mean single sequence MFE -24.39
Consensus MFE -16.57
Energy contribution -16.57
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -1.25
Structure conservation index 0.68
SVM decision value 0.44
SVM RNA-class probability 0.736121
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4478925 112 + 27905053
CUUCACCCUUGGCCUACUCGUCUUCGUGGCCAACAAGUUGUCCGGGGACAACUAUAGUCUGGAUCACUUGUUCGAAUACCAUGUAUGCC-AUAUGCUAUAUAC---CAUAUAU-CAU
.(((......((((....((....)).))))(((((((.((((..((((.......)))))))).))))))).)))....(((((((..-((((...))))..---)))))))-... ( -27.00)
>DroPse_CAF1 32332 113 + 1
CUUCACACUUGGCCUCCUCGUGUUUGUAGCCAACAAGUUGUCUGGCGACAACUACACACUGGACCAUCUAUUCGAAUAUCGUGUAUGCA----UUUUAAACAACAACCACUAUUAAA
....((((.(((..(((..((((((((.((((((.....)).)))).))))..))))...))))))((.....)).....)))).....----........................ ( -20.30)
>DroEre_CAF1 32870 109 + 1
CUUCACGCUUGGCCUACUCGUCUUCGUGGCCAACAAGUUGUCCGGGGACAACUAUAGUCUGGAUCACUUGUUCGAAUACCAUGUAUGAU-AUGCUAUAUAUAU------CUAU-CUU
.(((......((((....((....)).))))(((((((.((((..((((.......)))))))).))))))).)))..........(((-(((.....)))))------)...-... ( -26.30)
>DroYak_CAF1 33548 110 + 1
CUUCACGCUUGGCCUACUCGUCUUCGUGGCCAACAAGUUGUCCGGGGACAACUAUAGUCUGGAUCACUUAUUCGAAUACCAUGUAUGCC-AUAUAAUAUAUAU-----UUUAU-GCC
......((.((((.((((((.....(((((((((.(((((((....)))))))...)).))).)))).....))).......))).)))-).((((.......-----.))))-)). ( -24.71)
>DroAna_CAF1 33714 109 + 1
UUUCACCCUAGGCCUGCUCGUCUUCGUGGCCAACAAGUUGUCCGGAGAUAACUACAGUCUGGACCAUCUGUUCGAGUACCAUGUAAUUAAACCUAGGAUAAAC-------UUU-CAU
......((((((..((((((.....(((((((((.(((((((....)))))))...)).))).)))).....))))))...((....))..))))))......-------...-... ( -28.00)
>DroPer_CAF1 37498 113 + 1
CUUCACACUUGGCCUCCUCGUGUUUGUAGCCAACAAGUUGUCUGGCGACAACUACACACUGGACCAUUUAUUCGAAUAUCGUGUAUGCA----UUUUAAACAACAACCACUAUUAAA
....((((.(((..(((..((((((((.((((((.....)).)))).))))..))))...)))))).......(.....))))).....----........................ ( -20.00)
>consensus
CUUCACACUUGGCCUACUCGUCUUCGUGGCCAACAAGUUGUCCGGGGACAACUACAGUCUGGACCACUUAUUCGAAUACCAUGUAUGCA_AU_UUAUAUAUAA______CUAU_CAU
.(((....((((((....((....)).))))))..(((((((....)))))))....................)))......................................... (-16.57 = -16.57 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:33 2006