Locus 1560

Sequence ID 3R_DroMel_CAF1
Location 4,471,201 – 4,471,311
Length 110
Max. P 0.799613
window2576

overview

Window 6

Location 4,471,201 – 4,471,311
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 85.81
Mean single sequence MFE -20.16
Consensus MFE -15.93
Energy contribution -15.93
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.79
SVM decision value 0.61
SVM RNA-class probability 0.799613
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4471201 110 - 27905053
AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUUUUUCUUCUUCUAUUUUGCAUAUUAAUUGACAAUCGUGACUUUGUUUCGUACAUGCAUAUAGAAACCUGAAUGGAUCU
........((((((((((((((.(.........................)))))))))))))))..((((((........)).))))(((.(((....))).)))..... ( -18.01)
>DroSec_CAF1 24136 93 - 1
AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUU--UUUUCUUCUAUUUUGCAUAUUAAUUGACAAUCGUG---------------UGCAUAUAGAAACCUGAAUGGAUCU
........((((((((((((((.(.........--..............))))))))))))))).....(---------------(.(((.(((....))).))).)).. ( -16.80)
>DroSim_CAF1 24987 95 - 1
AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUUUUUUUUCUUCUAUUUUGCAUAUUAAUUGACAAUCGUG---------------UGCAUAUAGAAACCUGAAUGGAUCU
........((((((((((((((.(.........................))))))))))))))).....(---------------(.(((.(((....))).))).)).. ( -16.71)
>DroEre_CAF1 23899 96 - 1
AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUU---UUU-GUGUAU--UGCAUAUUAAUUGACAAUUGUG----UGUUUCGCA----CAUAUAGAAACCUGAAUGGAUCU
......((((((((((((((((...((((....---...-.)))).--..)))))))))))))...((((----((.....))----)))).)))..((.....)).... ( -24.70)
>DroYak_CAF1 25482 101 - 1
AUAAAAUCUGUCAAUUAGUAUGGCUUACAUUUUUUUUUU-GUGUAUUUUGCAUAUUAAUUGACAAUUGUG----UGUUUCGAA----CAUAUAGAAACCUGAAUGGAUCU
........((((((((((((((.(.(((((.........-)))))....))))))))))))))).(((((----(((.....)----)))))))...((.....)).... ( -24.60)
>consensus
AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUUUUUUUUCUUCUAUUUUGCAUAUUAAUUGACAAUCGUG____UGUUUCG_A__UGCAUAUAGAAACCUGAAUGGAUCU
........((((((((((((((.(.........................))))))))))))))).......................(((.(((....))).)))..... (-15.93 = -15.93 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:32 2006