| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,460,483 – 4,460,585 |
| Length | 102 |
| Max. P | 0.862376 |
| Location | 4,460,483 – 4,460,585 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.25 |
| Mean single sequence MFE | -37.33 |
| Consensus MFE | -27.40 |
| Energy contribution | -28.02 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4460483 102 - 27905053 UCCGACGGAUCUGCUGAGAUU---GUCGGCAGGACGAAAAUG--------UCCUGACCAAGGAAAUGCGUUUCACAACGCCUUGGUGGAAUGCAUUCGCUUGCAUCGCUUCAU .((((((.((((....)))))---)))))((((((......)--------)))))..((((..((((((((((((.........))))))))))))..))))........... ( -37.30) >DroSec_CAF1 13472 102 - 1 UCCGACGGAUCUGCUGAGAUU---GUCGGCAGGACGAAAAUG--------UCCUGACCAAGGAAAUGCAUUUCACAACGCCUUGGUGGAAUGCGUUCGCCUGCAUCGCUUCAU ..(((((.((((....)))))---))))(((((.((((....--------((((.....))))..((((((((((.........))))))))))))))))))).......... ( -37.50) >DroSim_CAF1 13893 102 - 1 UCCGACGGAUCUGCUGAGAUU---GUCGGCAGGACGAAAAUG--------UGCUGACCAAGGAAAUGCAUUUCACAACGCCUUGGUGGAAUGCGUUCGCCUGCAUCGCUUCAU ..(((((.((((....)))))---))))(((((.((((..((--------(..(.(((((((...((.......))...))))))).).)))..))))))))).......... ( -33.80) >DroEre_CAF1 13426 102 - 1 UGCGACGGAUCUGCUGAGAUU---AUCGGCAGGACGAAAAUG--------UCCUGGUCAAGGAAACGCAUUUCACAACGCCUUGGUGGAAUGCGUUCGCUUGCAUCGCUUCAU .(((((((..(((((((....---.)))))))(((......)--------)))))(.((((..((((((((((((.........))))))))))))..))))).))))..... ( -38.90) >DroYak_CAF1 14493 102 - 1 CCCGACGGAUCUGCUAAGGAU---GUCGGCAGGACGAAAAUG--------UCCUGGCCAGGGCAAUGCAUUCCACAACGCCUUGGUGGAAUGCGUUCGCUUGCAUCGCUUCAU .((((((..(((....))).)---)))))((((((......)--------)))))((.((.(.((((((((((((.........))))))))))))).)).)).......... ( -41.20) >DroMoj_CAF1 14562 108 - 1 UGCGACGGAUUUGAGCUGCUUUGAGUCGACAGGCCGUCAGCAACCGCUCAGCUUGACGAAGG-----CCGCCCAUGAGGCGCUGGUGGAGUGUGUGCGUCUACAUCGCUUCAU .(((.......(((((((((.((.(((....)))))..))))...)))))((((.....)))-----))))..((((((((...(((((((....)).)))))..)))))))) ( -35.30) >consensus UCCGACGGAUCUGCUGAGAUU___GUCGGCAGGACGAAAAUG________UCCUGACCAAGGAAAUGCAUUUCACAACGCCUUGGUGGAAUGCGUUCGCCUGCAUCGCUUCAU ..((((.(((((....)))))...))))(((((.((((............((((.....))))..((((((((((.........))))))))))))))))))).......... (-27.40 = -28.02 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:27 2006