Locus 1556

Sequence ID 3R_DroMel_CAF1
Location 4,458,879 – 4,458,978
Length 99
Max. P 0.978126
window2570

overview

Window 0

Location 4,458,879 – 4,458,978
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 73.79
Mean single sequence MFE -24.66
Consensus MFE -11.94
Energy contribution -13.83
Covariance contribution 1.89
Combinations/Pair 1.06
Mean z-score -2.36
Structure conservation index 0.48
SVM decision value 1.81
SVM RNA-class probability 0.978126
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4458879 99 - 27905053
AUG--CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCACAAAA-------UUCCAAUCUAUGCUCGAGGA-AAC
.((--(((............)))))....((((((((((.....(((((......)))))..))))))))))......-------((((.............)))-).. ( -28.32)
>DroVir_CAF1 13184 99 - 1
AUCUCUCGCUUCAGCAUUUUCCACUGACAGCUGGCGGCAUUUUAAUUGAAAGCAAUCAAUAACAACGCAC--------CCAACUCUUCCAACUUC--GACCGAAAUAUU
.((..(((((((((.........)))).)))(((..((......(((((......)))))......))..--------)))..............--))..))...... ( -14.20)
>DroSim_CAF1 11275 99 - 1
AUG--CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCACAAAA-------UUCCAAUCUAUGCUCAAGGA-AAC
.((--(((............)))))....((((((((((.....(((((......)))))..))))))))))......-------((((.............)))-).. ( -28.32)
>DroEre_CAF1 10797 99 - 1
AUG--CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCACCAAA-------UUCCAAUUUCUGCUUGCGGA-AUC
.((--(((............)))))....((((((((((.....(((((......)))))..))))))))))......-------.......(((((....))))-).. ( -30.30)
>DroYak_CAF1 11013 99 - 1
AUG--CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCACCAAA-------UUCCAAUUUAUGCUUGAGGA-AAC
.((--(((............)))))....((((((((((.....(((((......)))))..))))))))))......-------((((.............)))-).. ( -28.32)
>DroMoj_CAF1 11711 96 - 1
AUC--UCGCUUCAGCAUUUUGCAGUGACAGCUGGCGGCAUUUUAAUUGAAAGCAAUCAAUAAAAGCGCGU---------CAACUCUUCCAGCUUA--GAAUGAAAAAUC
...--.........(((((((.(((...((.(((((((.(((((.((((......))))))))))).)))---------)).))......)))))--)))))....... ( -18.50)
>consensus
AUG__CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCAC_AAA_______UUCCAAUUUAUGCUCGAGGA_AAC
.......((....))..............((((((((((.....(((((......)))))..))))))))))..................................... (-11.94 = -13.83 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:26 2006