Locus 1555

Sequence ID 3R_DroMel_CAF1
Location 4,457,794 – 4,457,889
Length 95
Max. P 0.958851
window2569

overview

Window 9

Location 4,457,794 – 4,457,889
Length 95
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 74.28
Mean single sequence MFE -22.10
Consensus MFE -13.64
Energy contribution -14.07
Covariance contribution 0.43
Combinations/Pair 1.13
Mean z-score -1.90
Structure conservation index 0.62
SVM decision value 1.49
SVM RNA-class probability 0.958851
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4457794 95 + 27905053
UUAAAGCCGCUUUGCGGCAAAAAGCCAU------------------CCACAGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCCCAAUCAAAUGGC
.....(((((...))))).....(((((------------------.....(((.(....).)))..........(((.(((((...)))))))).............))))) ( -21.10)
>DroSec_CAF1 9775 99 + 1
UUAAAGCCGCUUUGCGGCAAAAAGCCAUCCAU--------------CCACAGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCCCAAUCAAAUGGC
.....(((((...))))).....(((((....--------------.....(((.(....).)))..........(((.(((((...)))))))).............))))) ( -21.10)
>DroSim_CAF1 10181 99 + 1
UUAAAGCCGCUUUGCGGCAAAAAGCCAUCCAU--------------CCACAGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCCCAAUCAAAUGGC
.....(((((...))))).....(((((....--------------.....(((.(....).)))..........(((.(((((...)))))))).............))))) ( -21.10)
>DroEre_CAF1 9720 101 + 1
UUAAAGCCGCUUUGCGGCAAAAAGCCAGCCAUAGGCCCACGCC------------CACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCCAAUCACAUUCAUAUGGC
.....(((((...))))).........(((((((((....)))------------.....(((....)))....((((.(((((...)))))))))...........)))))) ( -26.90)
>DroYak_CAF1 9885 113 + 1
UUAAAGCCGCUUUGUGGCAAAAAGCCAGCCAGAAACCCACGCCCACGCACGGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCACAUUCAAAUGGC
.....(((((...))))).....((((....(((......((((......))))(.(((.(((....))).....(((....)))......))).).......)))...)))) ( -24.90)
>DroAna_CAF1 9615 72 + 1
UUAAAGCCGCUUUGUGGCAAACGA---------------------------ACCCCUCAAAAG-------ACAGGGGCU--AGUCGCAUUAUAGCGUAUCAAAAUCAG-----
.......((((.((((((......---------------------------.(((((......-------..)))))..--.))))))....))))............----- ( -17.50)
>consensus
UUAAAGCCGCUUUGCGGCAAAAAGCCAUCCAU______________CCACAGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCACAAUCAAAUGGC
.....(((((...))))).....((((.................................(((....))).....(((....)))........................)))) (-13.64 = -14.07 +   0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:25 2006