Locus 1552

Sequence ID 3R_DroMel_CAF1
Location 4,450,404 – 4,450,507
Length 103
Max. P 0.753692
window2565

overview

Window 5

Location 4,450,404 – 4,450,507
Length 103
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 84.97
Mean single sequence MFE -33.90
Consensus MFE -25.12
Energy contribution -25.23
Covariance contribution 0.11
Combinations/Pair 1.07
Mean z-score -2.78
Structure conservation index 0.74
SVM decision value 0.48
SVM RNA-class probability 0.753692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4450404 103 - 27905053
AUGCUCGGUGCUGCCAAGACGCAGGAUAAGGAUGUCAGCUCAUUAUGCAUCCUUCGCGUUUUUGAUUUGUUUGCACGAGACGUGCGCAUAAAUUGAGAUGCGU--
.......((.((((......)))).))(((((((.((........)))))))))((((((.(..((((((.((((((...)))))).))))))..))))))).-- ( -34.70)
>DroPse_CAF1 2736 88 - 1
---------------AAGAUGGGGGAUAAAGAUGUCGGCUCAUUAUGCAUCCUUCGCGUUUUUGAUUUGUUUGCACAAGACGUGCGCAUAAAUUGAGAUGCGU--
---------------.....(((((((.(.((((......)))).)..)))))))(((((.(..((((((.(((((.....))))).))))))..))))))..-- ( -27.20)
>DroSim_CAF1 2401 103 - 1
AUGCACGGUGCUGCCAAGACGCAGGAUAAGGAUGUCAGCUCAUUAUGCAUCCUUCGCGUUUUUGAUUUGUGUGCACGAGACGUGCGCAUAAAUUGAGAUGCGU--
.......((.((((......)))).))(((((((.((........)))))))))((((((.(..(((((((((((((...)))))))))))))..))))))).-- ( -41.00)
>DroYak_CAF1 2467 102 - 1
-UGCUCGGUGCUGCCAAGACGCAGGAUAAGGAUGUCAGCUCAUUAUGCAUCCUUCGCGUUUUUGAUUUGUGUGCACGAGACGUGCGCAUAAAUUGAGAUGCGU--
-......((.((((......)))).))(((((((.((........)))))))))((((((.(..(((((((((((((...)))))))))))))..))))))).-- ( -41.00)
>DroAna_CAF1 2622 95 - 1
-AG---------CCCAGGACGCUGGAUAAGGAUGUCGGCUCAUUAUGCAUCCUUGGCGUUUUUGAUUUGUUUGCACGAGACGUGCGCAUAAAUUGAGAUGUGAAC
-..---------.((((....)))).((((((((.((........))))))))))(((((.(..((((((.((((((...)))))).))))))..)))))).... ( -30.80)
>DroPer_CAF1 2749 88 - 1
---------------AAGAAGGGGGAUAAAGAUGUCGGCUCAUUAUGCAUCCUUCGCGUUUUUGAUUUGUUUGCACAAGACGUGCGCAUAAAUUGAGAUGCGU--
---------------..(((((((.((((.((.(....))).)))).).))))))(((((.(..((((((.(((((.....))))).))))))..))))))..-- ( -28.70)
>consensus
_UG_________GCCAAGACGCAGGAUAAGGAUGUCAGCUCAUUAUGCAUCCUUCGCGUUUUUGAUUUGUUUGCACGAGACGUGCGCAUAAAUUGAGAUGCGU__
...........................(((((((.((........)))))))))((((((.(..((((((.(((((.....))))).))))))..)))))))... (-25.12 = -25.23 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:21 2006