Locus 1551

Sequence ID	3R_DroMel_CAF1
Location	4,447,056 – 4,447,146
Length	90
Max. P	0.564645

overview

Window 4

Location	4,447,056 – 4,447,146
Length	90
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	85.26
Mean single sequence MFE	-22.50
Consensus MFE	-13.94
Energy contribution	-14.42
Covariance contribution	0.48
Combinations/Pair	1.20
Mean z-score	-2.07
Structure conservation index	0.62
SVM decision value	0.06
SVM RNA-class probability	0.564645
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4447056 90 - 27905053
AGCGAAGGAUCUUGGAUUGUUUUUAGCCAAAAGCUCCAGUUAACUGGGCUA----GUAACGAGAGGGGUAAUUAGGGAUGCAGGAAGCAAUUUA
.((......(((((.(((.((.(((.((...(((.((((....))))))).----....(....))).)))..)).))).))))).))...... ( -23.20)
>DroSec_CAF1 1532 90 - 1
AGCGAGGGAUCUUGGAUUGUUUUUAGCCAAAAGCUCCAGUUAACUGGGCUG----GUAACGAGAAGGAUAAUUAGGGAUGCAAGAAGCAAUUAA
.((...(.((((..((((((((((..(....(((.((((....))))))).----.....)..))))))))))..)))).).....))...... ( -25.10)
>DroSim_CAF1 2494 94 - 1
AGCGAAGGAUCUUGGAUUGUUUUUGGCCAAAAGCUCCAGCUAACUGGGCUGGCUAGUAACGAGAAGGAUAAUUAGGGAUGCAAGAAGCAAUUAA
....((..(((((...(((((.(((((((...((.((((....))))))))))))).)))))..)))))..)).....(((.....)))..... ( -26.50)
>DroEre_CAF1 1487 89 - 1
AGUGCAGAAUCUUGAAUUGUU-UUAGCCAAAAGCUCAAGUAAACUGGGCUU----AUAGCGAGAUGGAUAAUUAGGGCGGCACGAAACAAUUAA
.((((....((((((.(((((-(..((...(((((((.......)))))))----...)).....))))))))))))..))))........... ( -20.70)
>DroYak_CAF1 1593 90 - 1
AGCGAAGAAUCUUGAAUUGUUUUUAGCCAAAAGCUCAAGUAAACUGGGCUU----AAUACGAGAAGGAUAAUUAGGGAUGUACAAAACAAUUAA
........((((..((((((((((..(...(((((((.......)))))))----.....)..))))))))))..))))............... ( -17.00)
>consensus
AGCGAAGGAUCUUGGAUUGUUUUUAGCCAAAAGCUCCAGUUAACUGGGCUG____GUAACGAGAAGGAUAAUUAGGGAUGCAAGAAGCAAUUAA
.((...(.((((..((((((((((..(....(((.((((....)))))))..........)..))))))))))..)))).).....))...... (-13.94 = -14.42 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:20 2006