| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 799,043 – 799,154 |
| Length | 111 |
| Max. P | 0.894746 |
| Location | 799,043 – 799,154 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 64.60 |
| Mean single sequence MFE | -17.82 |
| Consensus MFE | -8.59 |
| Energy contribution | -8.65 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 799043 111 + 27905053 UCUAGCAAGGUAAU----UAAUAAUAAUUUCAUAGCAUACUUGUAUGCUGUUCCAGUAUAUUAUUUGAAUAUCUCCCUGCAUGUAUUAUGCGCUCAAAAUUAUACCUC----UA-UUUUU ...(((.(((((.(----(((((((((((..((((((((....))))))))...))).))))).)))).)))))....(((((...))))))))..............----..-..... ( -19.10) >DroSec_CAF1 37050 97 + 1 -------------U----UAAUAAUAAUUUCAUAGCAUACUUGUAUGCUGUACCAGUAAAUUAUUUGAAUAUCUCCUUGCAUAUUUAUCGCGCUCAAAAUUAUACUUC----UU-UUUU- -------------.----.....(((((((.((((((((....))))))))..............((((((((.....).))))))).........))))))).....----..-....- ( -12.80) >DroEre_CAF1 20705 108 + 1 UCUCACAAGUUACUUGCCUAAUAAAAACUGCAUAGCAUACUUGUAUGCUAUUUCAGUAAAUGCUUCGAAA-------UGCAUAUUCAUUGCGCCCAAACGUAUACCUC----AGUUUUA- .....((((...)))).......(((((((.((((((((....))))))))....(((.((((.......-------.))))......((((......)))))))..)----)))))).- ( -19.90) >DroYak_CAF1 26591 108 + 1 UCAUGUAAGGUACUUA----------UUUUCAUAGCAUACUUGUCUGCUAUUUCGGCAAAUGUUUUGAAUUUC-CCUUGUAUAUUCAUUGCGCCUAAACGAGUACUUCUCCCCACUUUU- ....(..(((((((..----------(((..((((((........))))))...(((....((..(((((...-........)))))..))))).)))..)))))))..).........- ( -19.50) >consensus UCU_GCAAGGUACU____UAAUAAUAAUUUCAUAGCAUACUUGUAUGCUAUUCCAGUAAAUGAUUUGAAUAUC_CCUUGCAUAUUCAUUGCGCCCAAAAGUAUACCUC____UA_UUUU_ ...............................((((((((....))))))))...........................(((.......)))............................. ( -8.59 = -8.65 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:06 2006