Locus 1549

Sequence ID 3R_DroMel_CAF1
Location 4,444,760 – 4,444,852
Length 92
Max. P 0.747424
window2562

overview

Window 2

Location 4,444,760 – 4,444,852
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 91.19
Mean single sequence MFE -30.57
Consensus MFE -25.39
Energy contribution -25.67
Covariance contribution 0.28
Combinations/Pair 1.18
Mean z-score -2.07
Structure conservation index 0.83
SVM decision value 0.47
SVM RNA-class probability 0.747424
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4444760 92 - 27905053
GUGCCCUGAGAUUUGGGCGCGGGAUUUGUGAAUCCAGAAUCUGGUCGAACAUGAAUCCGUAUGGCCGCUGGGAAAAGGAAUUUCCUAACGAG
((((((........)))))).(((((..((...((((...)))).....))..))))).......((.(((((((.....))))))).)).. ( -33.20)
>DroSec_CAF1 36223 92 - 1
GUGCCCUGAGAUUUGGGCGCGGGAUUUGUGAAUCCGGAAUCUGGUCGAACAUGAAUCCGUAUGGCCGCUGGGAAAAGGAAUUUCCUAACGAG
((((((........)))))).(((((..((...((((...)))).....))..))))).......((.(((((((.....))))))).)).. ( -32.50)
>DroSim_CAF1 38992 90 - 1
GUGCCC-GAGAUUUGGGCGCGGGAU-UGUGAAUCCAGAAUCUGGUCGAACAUGAAUCUGUAUGGCCGCUGGGAAAAGGAAUUUCCUAACGAG
((((((-((...)))))))).((((-(.((....)).)))))(((((.(((......))).)))))(.(((((((.....))))))).)... ( -31.70)
>DroEre_CAF1 37362 90 - 1
GUGCCCUGAGAUUUGGGCGCGGGAUUUGUG--UCCAGAAUCUGGUCGAACAUGAAUCCGUGUAGCCGCUGGGAAAAGGAAUUUCUUAACGAG
((((((........)))))).(((((..((--(((((...))))....)))..))))).......((.(((((((.....))))))).)).. ( -31.10)
>DroYak_CAF1 36977 90 - 1
GUGCCCUGAGAUUUGGGCGCGGGAUUUGUG--UCCAGAAUCUGGUGGAACAUGAAUCCAUAUUGCCGCUGGGAAAAGGAAUUUCUUAACGAG
((((((........)))))).(((((..((--((((........))).)))..))))).......((.(((((((.....))))))).)).. ( -32.00)
>DroAna_CAF1 42803 90 - 1
GUGGCCUGAGAUUUUGGUGCGGGAUUUGUG--UCCGAAAUCUGGUCGAACAUGAAUACGUAUUGCUGCAGGGAAAAGGAAUUCCUUAACGAA
....((((((.....((((((..(((..((--(.(((.......))).)))..))).)))))).)).))))...((((....))))...... ( -22.90)
>consensus
GUGCCCUGAGAUUUGGGCGCGGGAUUUGUG__UCCAGAAUCUGGUCGAACAUGAAUCCGUAUGGCCGCUGGGAAAAGGAAUUUCCUAACGAG
((((((........)))))).(((((((((...((((...)))).....))))))))).......((.(((((((.....))))))).)).. (-25.39 = -25.67 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:18 2006