| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,425,821 – 4,425,920 |
| Length | 99 |
| Max. P | 0.960660 |
| Location | 4,425,821 – 4,425,920 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 80.32 |
| Mean single sequence MFE | -35.30 |
| Consensus MFE | -20.01 |
| Energy contribution | -21.87 |
| Covariance contribution | 1.85 |
| Combinations/Pair | 1.19 |
| Mean z-score | -3.17 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.960660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4425821 99 - 27905053 -----UAUCAAAGCAGAUGCAAAUGAUUCUAUAUCGCGGAUCCAGGGAUCCAGGGAUCCACAGAUCCUGCGAUGGGAGGUGGCUUUGGCAAUUUAACGCCACUA -----.((((..((....))...))))(((.(((((((((((...(((((....)))))...))))).)))))))))((((((.((((....)))).)))))). ( -36.90) >DroPse_CAF1 33250 86 - 1 AGGCGUAUCAAAACAGAUGCAAAUCAUCUG------------UUGGG----AGGAGUUGCCAGGACUUG-GCAGAGAGGUAGCU-UGGCAAUUUAACGCCACUA .(((((.((..((((((((.....))))))------------))..)----).(((((((((((.(((.-.....)))....))-))))))))).))))).... ( -36.00) >DroSec_CAF1 26658 103 - 1 A-GCGUAUCAAAGCAGAUGCAAAUGAUUCUAUAUCGCGGGUCCUGGGAUCCAGGGAUCCUGAGAUCCUGCGAUGGGAGGUGGCUUUGGCAAUUUAACGCCACUA .-..(((((......))))).......(((.(((((((((((..((((((....))))))..)).))))))))))))((((((.((((....)))).)))))). ( -42.40) >DroSim_CAF1 29155 95 - 1 A-GCGUAUCAAAGCAGAUGCAAAUGAUUCUAUAUCGCGGGUCCUGGG--------AUCCUGAGAUCCUGCGAUGGGAGGUGGCUUUGGCAAUUUAACGCCACUA .-..(((((......))))).......(((.(((((((((((..((.--------...))..)).))))))))))))((((((.((((....)))).)))))). ( -33.20) >DroEre_CAF1 26825 95 - 1 A-GCGUAUCAAAGCAGAUGCAAAUGAUUCCAUAUCGCGGGUCCUGGA--------AUCCUGAGAUGCUGCGAUGGGAGGUUGCUUUGGCAAUUUAACGCCACUA (-(((((((......)))))......((((.(((((((((((..((.--------...))..))).))))))))))))...))).((((........))))... ( -30.30) >DroYak_CAF1 27099 95 - 1 A-GCGUAUCAAAGCAGAUGCAAAUGAUGCCAUAUCGCGGGUCCUGGA--------AUCCUGAGAUCCUGCGAUGGGAGGUGGCUUUGGCAAUUUAACGCCACUA .-..(((((......)))))........((.(((((((((((..((.--------...))..)).))))))))))).((((((.((((....)))).)))))). ( -33.00) >consensus A_GCGUAUCAAAGCAGAUGCAAAUGAUUCUAUAUCGCGGGUCCUGGG________AUCCUGAGAUCCUGCGAUGGGAGGUGGCUUUGGCAAUUUAACGCCACUA ....(((((......)))))......(((((..(((((((((..(((.........)))...))))).)))))))))((((((.((((....)))).)))))). (-20.01 = -21.87 + 1.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:13 2006