| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,421,856 – 4,421,954 |
| Length | 98 |
| Max. P | 0.889645 |
| Location | 4,421,856 – 4,421,954 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.99 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -21.50 |
| Energy contribution | -23.70 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4421856 98 - 27905053 UCCUCUCCAUGACAUCUUGAUGGAUGUGCGGUCGGCGAGCAGCUGCUCCUGUGGACACCCUCCAUCAU-------CCUUCGCCGCCAUCAGCACCGAACAUCCCC .....................((((((.((((.(((((((....))))..(((((.....)))))...-------.....)))((.....)))))).)))))).. ( -29.70) >DroSec_CAF1 22729 99 - 1 UCCUCUCCAUGACAUCUUGAUGGAUGUGCGGGCGGCGAGCAGCUGCUCCAGUGGACACCCUCCAUCAUCCUUCAUCCUUCGCCGCCAUCAGCACCCUAC------ .....(((((.(.....).))))).((((.((((((((((....))))..(((((.....)))))...............))))))....)))).....------ ( -33.60) >DroSim_CAF1 25277 99 - 1 UCCUCUCCAUGACAUCUUGAUGGAUGUGCGGGCGGCGAACAGCUGCUCCAGUGGACACCCUCCAUCAUCCUUCAUCCUUCGCCGCCAUCAGCACCCAAC------ .....(((((.(.....).))))).((((.(((((((((..((((...))))(((.....)))..............)))))))))....)))).....------ ( -32.00) >DroEre_CAF1 22644 98 - 1 UCCUCGCCAUGACAUCUUGAUGGAUGUGCGGGCGGCGAGCAGCUGCUCCAGUGGACAUCCUCCAUCAU-------CCUUCGCCGCCAUCAGCAGCCAACACCCAA .....((....((((((....))))))((.((((((((((....))))..(((((.....)))))...-------.....))))))....)).)).......... ( -32.70) >DroYak_CAF1 23120 98 - 1 UCCUCUCCAUGACAUCUUGAUGGAUGUGCGGGCGGCGAGCAGCUGCUCCAGUGGACAUCCUCCAUCAU-------CCUUCGCCGCCAUCAACACCCAACACCCAA .................((.(((.(((...((((((((((....))))..(((((.....)))))...-------.....))))))....))).))).))..... ( -30.70) >DroAna_CAF1 28812 93 - 1 UCUUCUCCAUGACAACUUGAUGGAUGUGCGGGCGUCAAACAGCUGCUCCUG--G----UCUCGACCCUGCUCCUGCCAUGGCAUCCUUCAUCACCCAUA------ ........(((......(((.(((((((((((.(((...(((......)))--.----....))))))))..(......))))))).))).....))).------ ( -22.40) >consensus UCCUCUCCAUGACAUCUUGAUGGAUGUGCGGGCGGCGAGCAGCUGCUCCAGUGGACACCCUCCAUCAU_______CCUUCGCCGCCAUCAGCACCCAAC______ .....(((((.(.....).))))).((((.((((((((((....))))..(((((.....)))))...............))))))....))))........... (-21.50 = -23.70 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:12 2006