Locus 1545

Sequence ID 3R_DroMel_CAF1
Location 4,419,401 – 4,419,499
Length 98
Max. P 0.991439
window2555

overview

Window 5

Location 4,419,401 – 4,419,499
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 92.19
Mean single sequence MFE -26.68
Consensus MFE -22.56
Energy contribution -22.96
Covariance contribution 0.40
Combinations/Pair 1.08
Mean z-score -2.16
Structure conservation index 0.85
SVM decision value 2.27
SVM RNA-class probability 0.991439
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4419401 98 + 27905053
CAAUGGCGCAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUACAUUAAUUGCAUCGGUUACGUAAGUAACAUGUGGCAUACAAUGUGGCAUUGAAAU
(((((.(((((((....)))........(((.((((((((((......)))))))..(((((....)))))....))).)))..)))).))))).... ( -32.10)
>DroSec_CAF1 20294 97 + 1
CAAUGGCGCAAGUAGCAACUGGAUAUGAGUAAACCGUGCAGUACAUUAAUUGCAUCGGUUACGUAAGUUACAUGUGGCACACAA-AUGGCAUUGAAAU
(((((.((...(((((.(((.......))).(((((((((((......)))))).)))))......))))).((((...)))).-.)).))))).... ( -25.60)
>DroSim_CAF1 22002 97 + 1
CAAUGGCGCAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUACAUUAAUUGCAUCGGUUACGUAAGUAACAUGUGGCACACAA-AUGGCAUUGAAAC
(((((.(((.....))............((..((((((((((......)))))))..(((((....)))))....)))..))..-..).))))).... ( -26.60)
>DroEre_CAF1 20260 96 + 1
CAAUGGCACAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUGUAUUAAUUGCAUCAGUAACGUAAGUUACAUGUGGCACACAA--UGGCUUUGAAUU
(((.(((.(((((....)))........((..((((((((((......)))))))..(((((....)))))....)))..))..--)))))))).... ( -23.60)
>DroYak_CAF1 20697 96 + 1
CAAUGACACAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUACAUUAAUUGCAUCGGUUAGGUAAGUUACGUGUGGCAUACAA--UGGCAUUGAAAC
(((((.((((.(((((.(((.......))).(((((((((((......)))))).)))))......))))).)))).(((...)--)).))))).... ( -25.50)
>consensus
CAAUGGCGCAAGUAGCAACUGGAUAUGAGUAAGCCGUGCAGUACAUUAAUUGCAUCGGUUACGUAAGUUACAUGUGGCACACAA__UGGCAUUGAAAU
...((.((((.(((((.(((.......))).(((((((((((......)))))).)))))......))))).)))).))................... (-22.56 = -22.96 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:11 2006