Locus 1544

Sequence ID 3R_DroMel_CAF1
Location 4,418,885 – 4,418,985
Length 100
Max. P 0.890020
window2554

overview

Window 4

Location 4,418,885 – 4,418,985
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 89.70
Mean single sequence MFE -27.44
Consensus MFE -21.02
Energy contribution -22.62
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.77
SVM decision value 0.96
SVM RNA-class probability 0.890020
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4418885 100 - 27905053
GGUUGGCACAAAAAGGACGGCAGCAGGAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUUUCGAAAAUCGAAGAAAUACCGU
(((((((......(((((.(((....(((((....))....))).......))).))))).......))))....((((((.....))))))...))).. ( -28.52)
>DroSec_CAF1 19806 90 - 1
GGGUG----------GACGGCAGCAGAAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUUUCGAAAAUCGAAGAACUACCGU
.((((----------(..(((........((....))((.(((((......)).))).)).......))).....((((((.....)))))).))))).. ( -24.20)
>DroSim_CAF1 21504 100 - 1
GGGUGGCACAAAAAGGACGCCAGCAGAAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUUUCGAAAAUCGAAGAAAUACCGU
(((((((......((((((((.......)))....(((.............))).))))).......))))))).((((((.....))))))........ ( -27.84)
>DroEre_CAF1 19752 100 - 1
GGGUGGCACAAAAAGGACUGCUACAGCAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUCUCGAAAAUCGAAGAAAUAACGU
(((((((......((((((((....((..((....)).))....(......))))))))).......))))))).((((((.....)).))))....... ( -30.42)
>DroYak_CAF1 20180 100 - 1
GGGUGGCACAAAAAGGACUGCCACAGGAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUUAAAUCAGCAAUUCGUUCUCGAAAAUCGAAGAAAAAACGU
((((.((.....(((((((((.....(((((....))....)))........)))))))))......)).)))).((((((.....)).))))....... ( -26.22)
>consensus
GGGUGGCACAAAAAGGACGGCAGCAGAAGGCGGAAGCAGCACUCAGAUAAAUGCAGUCCUCAAAUCAGCCAUUCGUUUUCGAAAAUCGAAGAAAUACCGU
(((((((......(((((...........((....)).(((..........))).))))).......))))))).((((((.....))))))........ (-21.02 = -22.62 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:10 2006