| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,410,006 – 4,410,114 |
| Length | 108 |
| Max. P | 0.888964 |
| Location | 4,410,006 – 4,410,114 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.71 |
| Mean single sequence MFE | -21.68 |
| Consensus MFE | -17.17 |
| Energy contribution | -17.67 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4410006 108 + 27905053 UGCCCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAUCCACCACCC--A-CCCGCCAUACCACCCUUUCGAUGCCC--CACC .......((((((...((....)).((((((((((.......)))))))))).......))))))----............--.-..........................--.... ( -19.10) >DroSec_CAF1 11088 103 + 1 UGCCCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAUCCCCCACCC--A-CC----AUC-CCCCCUUUCGAUGCCC--CACC .......((((((...((....)).((((((((((.......)))))))))).......))))))----............--.-.(----(((-.........))))...--.... ( -19.90) >DroSim_CAF1 12782 101 + 1 UGCCCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAUCCCCCACCC--A-CC----AUC-C--CCUUUCGAUGCCC--CACC .......((((((...((....)).((((((((((.......)))))))))).......))))))----............--.-.(----(((-.--......))))...--.... ( -20.40) >DroEre_CAF1 10985 92 + 1 UGCUCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAC-----------CCCC----AUC----CCCCUCUAUGCCC--CACC .......((((((...((....)).((((((((((.......)))))))))).......))))))----...-----------....----...----.............--.... ( -19.10) >DroYak_CAF1 11299 101 + 1 UGCUCCUGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC----CAUCCCCCCGCC--CCCC----ACC----CACUUCGCUGCCC--CACC .((....((((.((...........((((((((((.......))))))))))...........((----.........)).--....----...----.)).)))).))..--.... ( -21.30) >DroAna_CAF1 16441 108 + 1 UGUUU-GUCGCUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGCUUCACAUCCCACCCCUCGAGCU----AUC----UAGCUCACCGCCCAGCACC .....-...((((...((.......((((((((((.......))))))))))..............................(((((----...----.)))))...)).))))... ( -30.30) >consensus UGCCCCAGCGAUGUCUGCACUUGUUGUGGCCAUAAUUGAAUUUUAUGGCCGCUUAUUUUUAUUGC____CAUCCCCCACCC__A_CC____AUC____CCUUUCGAUGCCC__CACC .........((((...(((......((((((((((.......))))))))))..........)))....))))............................................ (-17.17 = -17.67 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:07 2006