Locus 154

Sequence ID 3R_DroMel_CAF1
Location 796,508 – 796,625
Length 117
Max. P 0.561111
window251

overview

Window 1

Location 796,508 – 796,625
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 73.24
Mean single sequence MFE -30.73
Consensus MFE -18.98
Energy contribution -18.85
Covariance contribution -0.13
Combinations/Pair 1.27
Mean z-score -1.52
Structure conservation index 0.62
SVM decision value 0.05
SVM RNA-class probability 0.561111
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 796508 117 + 27905053
GAUGGCGCAAAAUAGAUUGCGUGUAAUAGGUGGCGCGAUAU---ACAGUUAUCAGGGCUGCAUAGGUCUUGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGAAUUGAGUCUGGUUA
.((.((((...((..((((....))))..)).)))).))..---.(((...((((((((.....)))))))).((((((((((..(((((...)))))..))))))))))...))).... ( -38.50)
>DroSec_CAF1 20382 98 + 1
-------------------CGUGAAAAAGAUGGCGUGAUAU---ACAUUUAUCAUGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGUAUUGAGUCUGGUUA
-------------------............(.(((((((.---.....))))))).).........(..((.((((.(((((..(((((...)))))..))))).))))..))..)... ( -25.70)
>DroSim_CAF1 21297 115 + 1
--UGGCGUGAAAAAGAUGGCGUGUAAUAGGUGGCGUGAUAC---ACAUUUAUCAUGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGUAUUGAGUCUGGUUA
--..((((.(......).)))).......(..((((((((.---.....)))))).))..)......(..((.((((.(((((..(((((...)))))..))))).))))..))..)... ( -30.50)
>DroEre_CAF1 19453 102 + 1
GAUAA--------------CGUGAAAUAGAUGGCGUAAAAUAUUACAUAUAUCAGGGCUCCGUAAGUC---AGUGAUU-CACGUUAUCUGCCAUAGAUGGCGUUGAGUUGGGCUGUGAUA
....(--------------(((.(......).)))).............(((((.((((((....)..---...((((-(((((((((((...))))))))).))))))))))).))))) ( -28.20)
>consensus
__UGG______________CGUGAAAUAGAUGGCGUGAUAU___ACAUUUAUCAGGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGAAUUGAGUCUGGUUA
...............................(((.....................((((.....)))).....((((((((((..(((((...)))))..)))))))))).)))...... (-18.98 = -18.85 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:05 2006