Locus 1538

Sequence ID 3R_DroMel_CAF1
Location 4,391,599 – 4,391,719
Length 120
Max. P 0.956402
window2547

overview

Window 7

Location 4,391,599 – 4,391,719
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.58
Mean single sequence MFE -38.93
Consensus MFE -33.90
Energy contribution -34.30
Covariance contribution 0.40
Combinations/Pair 1.08
Mean z-score -1.74
Structure conservation index 0.87
SVM decision value 1.47
SVM RNA-class probability 0.956402
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4391599 120 - 27905053
UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUCCGGGUUAGCUCGCGGGCAAACUGCUCGCCAUUAAUGGGGGCACUUGGAGCCUUA
....((((......((((.....))))(((((....))))).(((((...(((((((((((((....))).))))).))))).....(((((.(((....)))))))).))))).)))). ( -37.60)
>DroSec_CAF1 3955 120 - 1
UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUGCGGGUUAGCUCGUAGGCAAACUGCUCGCCAUUAAUGGGGGCACUUGGAGCCUUA
....((((......((((.....))))(((((....))))).(((((...((((((((((((..((((((....))))))))).))))))...(((....))))))...))))).)))). ( -38.30)
>DroSim_CAF1 3941 120 - 1
UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAGAUCUCGUAGUUGCUCAUGCGGGUUAGCUCGUAGGCAAACUGCUCGCCAUUAAUGGGGGCACUUGGAGCCUUA
....((((......((((.....))))(((((....))))).((((((.........(((((..((((((....)))))))))))..(((((.(((....)))))))))))))).)))). ( -41.60)
>DroEre_CAF1 3861 120 - 1
UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUGCGGGCCAGCUCGUUGGCGAACUGCUCGCCAUUAAUAGGUUCACUUGGGGCCUUA
.((((.((.......((((.((((((((((.((((((((((...(........)...))))....))))))))))))))))))))........)).)))).((((((.....)))))).. ( -37.76)
>DroYak_CAF1 3761 120 - 1
UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUGCGGGUUAGCUCGUAGGCGAACUGCUCGCCAUUAAUGGGUGCACUUGGGGCCUUA
......((((....((((.....))))(((((....)))))))))....(((((.(((((((((((((((....))))).(((((.....)))))....))))))).))))))))..... ( -39.40)
>consensus
UUUAAAGGAUAUAUCUCGUUCAACGAGUUGCGCUUGCGCAAAUCCAAAAUCUCGUAGUUGCUCAUGCGGGUUAGCUCGUAGGCAAACUGCUCGCCAUUAAUGGGGGCACUUGGAGCCUUA
....((((......((((.....))))(((((....))))).(((((......(((((((((..((((((....)))))))))).)))))..(((.........)))..))))).)))). (-33.90 = -34.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:03 2006