Locus 1537

Sequence ID 3R_DroMel_CAF1
Location 4,391,239 – 4,391,359
Length 120
Max. P 0.527913
window2546

overview

Window 6

Location 4,391,239 – 4,391,359
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.42
Mean single sequence MFE -40.02
Consensus MFE -25.92
Energy contribution -26.76
Covariance contribution 0.84
Combinations/Pair 1.22
Mean z-score -1.85
Structure conservation index 0.65
SVM decision value -0.01
SVM RNA-class probability 0.527913
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4391239 120 - 27905053
GGCAGUUGUGCAAUGGAUUUCUGGGGAGAGGCAGCGGCGGAUCGCCUAGGAGAAGGCGCAAUCGGUGGUGAAGAUAACGCCGUAACUGGCGAAGUCGGAACAGAUUUCAUUGCGACAGCG
....(((((((((((((..((((......(((.((.((.((((((((......)))))..))).)).))........(((((....)))))..)))....)))).)))))))).))))). ( -45.10)
>DroSec_CAF1 3595 120 - 1
GGAGGUUGUGCAAUGGAUUUCUGGGGAGCGGUAAUGGCGGAUUGCCUAGGAGAAGGCGCAAUCGGUGGUGACGAUAACGCGCUAACUGGCGAGGUCGGAAUAGAUUUCAUUGCAACAGCA
....(((((((((((((((((((((.(((.((....)).).)).))))))))..(((((.((((.......))))...)))))..(((((...))))).......)))))))).))))). ( -41.00)
>DroSim_CAF1 3581 120 - 1
GGAGGUUGUGCAAUGGAUUUCUGGGGAGAGGUAACGGCGGAUUGCCUAGGAGAAGGCACAAUCGGUGGUGAAGAUAACGCCGUAACUGGCGAAGUCGGAACAGAUUUCAUCGCGACAGCG
....(((((((.(((((..((((..........((.((.((((((((......)))))..))).)).))...(((..(((((....)))))..)))....)))).))))).)).))))). ( -38.90)
>DroEre_CAF1 3501 120 - 1
GGAGGUUGUGCAAUGGAUUUCUGGGUAGAGGCAGCGGCUGGUUGCCUAGGAGAAGACGCAAUCGGUGAUGAAGAUGACGCCGUAACUGGCGCUGUCGGAACAGAUUUCAUCGGUAUAGAG
.....((((((....((..((((..(...((((((.(((((((((((......))..)))))))))............((((....)))))))))).)..))))..))....)))))).. ( -39.30)
>DroYak_CAF1 3404 117 - 1
GGAGGUUGUGGAAUGGAUUUCUGGGGAGAGACAGCGGCGGAUCGCCCA---GAAGACGCAAUCGGUGGUGAAGAAGUCGCCGCAACUGGCGAUGUCGGAAUAGAUUUCAUAGGGGUAGAA
.....(((((((((...((((((((..((..(......)..)).))))---)))).(((.....(((((((.....))))))).....)))............)))))))))........ ( -35.80)
>consensus
GGAGGUUGUGCAAUGGAUUUCUGGGGAGAGGCAGCGGCGGAUUGCCUAGGAGAAGGCGCAAUCGGUGGUGAAGAUAACGCCGUAACUGGCGAAGUCGGAACAGAUUUCAUCGCGACAGCG
....(((((((.(((((..((((..........((.((.((((((((......)))))..))).)).))...(((..(((((....)))))..)))....)))).))))).)).))))). (-25.92 = -26.76 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:02 2006