Locus 1535

Sequence ID 3R_DroMel_CAF1
Location 4,383,803 – 4,383,903
Length 100
Max. P 0.935462
window2544

overview

Window 4

Location 4,383,803 – 4,383,903
Length 100
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 73.92
Mean single sequence MFE -20.03
Consensus MFE -7.68
Energy contribution -8.52
Covariance contribution 0.84
Combinations/Pair 1.14
Mean z-score -2.09
Structure conservation index 0.38
SVM decision value 1.24
SVM RNA-class probability 0.935462
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4383803 100 - 27905053
AAGCAACACAGCAAUAAAUGCUUUAAUAUUGGCUC----GAGUUUUCCGCAGCAAGUGGAAAACUGAAAAACAGUUGCAUCUGCCAUUAACAU-UUGCACAAAAU
..((((...((((.....))))....((.((((((----.((((((((((.....)))))))))))).....((......)))))).))....-))))....... ( -24.50)
>DroSim_CAF1 61181 100 - 1
AAGCAGCACAACAAUAAAUGCUUUAAUAUUGGCUC----GAGUUUUCCGCUGCAAUUGGAAAACUGAAAAACAGUUGCAUCUGCAAUUUACAU-UUGCACAAAAU
..(((((............(((........)))((----.(((((((((.......)))))))))))......)))))...(((((.......-)))))...... ( -23.00)
>DroEre_CAF1 72158 100 - 1
AAGCAACACAACAAUAAAUGCUUUAAUUUUCGCUC----GAGCUUUCCCCAGCAACUGGAAAGCUGAAAAACGGAUGCAUCUGCUAUUUGCAU-UUGCGCAAAAU
(((((.............)))))..((((((((((----.((((((((.........)))))))))).....(((((((.........)))))-))))).))))) ( -22.52)
>DroYak_CAF1 64217 100 - 1
AAGCAACACAACAAUAAAUGCUUUAAUUUUGGCUC----GAGUUUUCCCCAGCAAUUGGAAAACUGAAAAACAGAUGCAUCUGCUAUUUACAU-UUGCACAAAAU
(((((.............)))))..((((((((((----.((((((((.........))))))))))....((((....))))..........-..)).)))))) ( -17.22)
>DroAna_CAF1 68435 84 - 1
CAGGCACAGGGC---UAAUGCUUUAAAAUUGCCACAAUCAAAUAUUCACCU--AUUUGGAAAUGU----------------UCCUAUUAACCCAAUGUACAGAAU
.(((.(((.(((---.(((........))))))....(((((((......)--))))))...)))----------------.))).................... ( -12.90)
>consensus
AAGCAACACAACAAUAAAUGCUUUAAUAUUGGCUC____GAGUUUUCCCCAGCAAUUGGAAAACUGAAAAACAGAUGCAUCUGCUAUUUACAU_UUGCACAAAAU
..(((..............(((........))).......((((((((.........))))))))................)))..................... ( -7.68 =  -8.52 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:59 2006