Locus 1532

Sequence ID 3R_DroMel_CAF1
Location 4,373,974 – 4,374,079
Length 105
Max. P 0.728953
window2541

overview

Window 1

Location 4,373,974 – 4,374,079
Length 105
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 82.12
Mean single sequence MFE -15.20
Consensus MFE -10.74
Energy contribution -10.70
Covariance contribution -0.04
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.71
SVM decision value 0.42
SVM RNA-class probability 0.728953
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4373974 105 - 27905053
CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCUCAUUCGAUAUGAUAUCA-UUCCCCCUUCUCAUUUUAA-CCCCAAAGAUUUUCCCA
.......(((((.((((...((((....(((((....))))).....)))).....)))))))))....-...................-................. ( -14.90)
>DroSim_CAF1 51464 104 - 1
CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCUCAUUCGAUAUGAUAUCA-UGCCCCCACCC-ACUUUAC-CCCCGAAGAUUUUCCCA
.......(((((.((((...((((....(((((....))))).....)))).....)))))))))....-...........-.((((..-....))))......... ( -15.70)
>DroEre_CAF1 62403 100 - 1
CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCCCAUUCGAUAUGAUAUCA-UCC---CACCC-A-UUUAU-ACCCGAAGAUUUUCGCA
.......(((((.((((..(((..(...(((((....)))))......)..)))..)))))))))....-...---.....-.-.....-...((((....)))).. ( -15.40)
>DroYak_CAF1 53725 100 - 1
CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCCCAUUCGAUAUGAUAUCA-UCC---CACCC-A-UUUAU-UCCCAAAGAUUUUCCCA
.......(((((.((((..(((..(...(((((....)))))......)..)))..)))))))))....-...---.....-.-.....-................. ( -14.80)
>DroAna_CAF1 59132 101 - 1
GACAAUCAUCAUUAUUAUCUGGCUCAUUUGAGAGAAAUGCCAUUUCCAGUUUCACUUGAAAGCCCUUCAAUGGUUUCACCC-A----AGACCCGAAAGACUUACC-A
....................((((..((..((.(((((..........))))).))..)))))).......(((((.....-.----)))))(....).......-. ( -15.20)
>consensus
CAUAAUCAUCAUUAUUGUCUGGCUCAUUUGACAGCAAUGUCAUUUCCAGUCUCAUUCGAUAUGAUAUCA_UCC___CACCC_A_UUUAU_CCCCAAAGAUUUUCCCA
...((((.........(.((((......(((((....)))))...)))).)......(((.....))).............................))))...... (-10.74 = -10.70 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:56 2006