Locus 1530

Sequence ID 3R_DroMel_CAF1
Location 4,368,656 – 4,368,751
Length 95
Max. P 0.601366
window2539

overview

Window 9

Location 4,368,656 – 4,368,751
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.96
Mean single sequence MFE -25.87
Consensus MFE -18.58
Energy contribution -19.08
Covariance contribution 0.50
Combinations/Pair 1.17
Mean z-score -1.31
Structure conservation index 0.72
SVM decision value 0.14
SVM RNA-class probability 0.601366
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4368656 95 + 27905053
GUUGCUCAUUU--CAUAUGCGAUGUAGGUUGGUAAAUCUGAAAGGGGCUGGCAAUCGCUUUCAAUUGCCAGAGCCCAAAACAAUCCUUUCCACUCCA
(((((......--.....)))))...((.(((............(((((((((((........))))))..))))).............)))..)). ( -23.61)
>DroSec_CAF1 55710 95 + 1
GUUGUACAUUU--CAUAUGCGAUGCAGGUUGGUAAAUCUGAAAGGGGCUGGCAAUCGCUUCCAAUUGCCGGAGUCCCGAACAAUCCUUUCCACUCCA
(((((.(....--...........((((((....))))))...((((((((((((........))))))..))))))).)))))............. ( -24.30)
>DroSim_CAF1 46047 94 + 1
-UUGUACAUUU--CAUAUGCGAUGCAGGUUGGUCAAUCUGAAAGGGGCUGGCAAUCGCUUCCAAUUGCCGGAGUCCCGAACAAUCCUUUCCACUCCA
-((((.(....--...........((((((....))))))...((((((((((((........))))))..))))))).)))).............. ( -23.20)
>DroEre_CAF1 57111 94 + 1
-CUGUCCAUUU--CAUAUGAGAUGCAGGUUGCGAAAUCUGAAAGGGGCUGGCAAACGCUUCCAAUUGCCAAAGCCCCGAACAAUCCUUUCCACUCCA
-.....(((((--(....))))))((((((....))))))...(((((((((((..........)))))..)))))).................... ( -27.00)
>DroYak_CAF1 48341 95 + 1
UCUGUCCAUUU--CAUAUGCGUUGCAGGUUAGGAAAUCUGAAAGGGGCUGGCAAUCGCUUCCAAUUGCCAAAGCCCCGAACAAUCCUUUCCACUCCA
...........--....(((...)))((..((((....((...((((((((((((........))))))..))))))...)).))))..))...... ( -27.10)
>DroPer_CAF1 45638 94 + 1
GGUG-AGACUGUAUGUAU-GGUUCCAGGUUGGACAAUCUGAAAAGGGCUGGCAAUCGUUCCCAAUAGCUGAAGCAGGGACCACAGCACAGCAGUCC-
....-.((((((.(((.(-((((((.(((((..((.(((....)))..)).)))))..........((....)).)))))))..)))..)))))).- ( -30.00)
>consensus
GUUGUACAUUU__CAUAUGCGAUGCAGGUUGGUAAAUCUGAAAGGGGCUGGCAAUCGCUUCCAAUUGCCAAAGCCCCGAACAAUCCUUUCCACUCCA
........................((((((....))))))...((((((((((((........))))))..)))))).................... (-18.58 = -19.08 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:54 2006