| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,352,072 – 4,352,170 |
| Length | 98 |
| Max. P | 0.749267 |
| Location | 4,352,072 – 4,352,170 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 92.01 |
| Mean single sequence MFE | -26.66 |
| Consensus MFE | -23.62 |
| Energy contribution | -24.38 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4352072 98 - 27905053 -UCGAGUUGGUCUGUCUCAGCUCAACUCUCCGCUCAUCCCAGUUCGCU--UUUGGGCCGGCUGAGUUAUGGUGGGCAAUAAAUUUAUAUGACAUAUAAAUG -..((((((..(((...)))..))))))...((((((((((((..(((--....)))..)))).)....))))))).....((((((((...)))))))). ( -28.90) >DroSec_CAF1 39375 96 - 1 -UCGAGUUGGUCUGU--CAGCUCAACUCUCCGCUCAUCCCAGUUCGCU--UUUGGGCCGGCUGAGUUAUGGUGGGCAAUAAAUUUAUAUGACAUAUAAAUG -..(((((((....)--))))))........((((((((((((..(((--....)))..)))).)....))))))).....((((((((...)))))))). ( -26.70) >DroSim_CAF1 29702 98 - 1 -UCGAGUUGGUCUGUCUCAGCUCAGCUCUCCGCUCAUCCCAGUUCGCU--UUUGGGCCGGCUGAGUUAUGGUGGGCAAUAAAUUUAUAUGACAUAUAAAUG -..((((((..(((...)))..))))))...((((((((((((..(((--....)))..)))).)....))))))).....((((((((...)))))))). ( -28.90) >DroEre_CAF1 39422 93 - 1 -UCGAGUUGCUC----UCAGCUCAACUCUCCGCUCAUCCCAGUUCU---CUUUGGCCCGGCUGAGUUAUGGUGGGCAAUAAAUUUAUAUGACAUAUAAAUG -....(((((((----(((....(((((...(((....((((....---..))))...))).))))).))).)))))))..((((((((...)))))))). ( -21.60) >DroYak_CAF1 31200 97 - 1 CUCGAGUUGGUC----UCAGCUCGACUCUUCGCUCAUCCCAGUUCUCCUCUUUGGGCCGGCUGAGUUAUGGUGGGCAAUAAAUUUAUAUGACAUAUAAAUG .((((((((...----.))))))))......(((((((((((((..(((....)))..))))).)....))))))).....((((((((...)))))))). ( -27.20) >consensus _UCGAGUUGGUCUGU_UCAGCUCAACUCUCCGCUCAUCCCAGUUCGCU__UUUGGGCCGGCUGAGUUAUGGUGGGCAAUAAAUUUAUAUGACAUAUAAAUG ...((((((..((.....))..))))))...(((((((((((((.(((......))).))))).)....))))))).....((((((((...)))))))). (-23.62 = -24.38 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:48 2006