Locus 1522

Sequence ID 3R_DroMel_CAF1
Location 4,347,768 – 4,347,888
Length 120
Max. P 0.827622
window2530

overview

Window 0

Location 4,347,768 – 4,347,888
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.25
Mean single sequence MFE -40.96
Consensus MFE -34.62
Energy contribution -34.74
Covariance contribution 0.12
Combinations/Pair 1.15
Mean z-score -1.50
Structure conservation index 0.85
SVM decision value 0.70
SVM RNA-class probability 0.827622
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4347768 120 + 27905053
GCCGAGGCCGCAUACAAAUGCAGCUGCCAGGAGUUCGUGCAUCCUUGGACCUCCAGCUGCGCCUGUGCGACGGCUGGGAUGCUAUUAUCCCUAAUCCCUGGCACAUUUAAGACCUAUAGU
((((.((((((.((((..((((((((((((((((....)).))).))).....))))))))..)))).).)))))((((((....)))))).......)))).................. ( -43.60)
>DroSec_CAF1 35018 120 + 1
GCUGAGGCCGCCUUCAAAUGCAGCUGCCAGGAGUUCGUGCAUCCUUGGACCUCCAGCUGCGCCUGUGCGACGGCUGGAAUGCUAUUAUCCCUAAUCCCUGGCACAUUUAAGACCUAUAGC
(((((((....(((.(((((....(((((((.(((((........))))).(((((((((((....))).))))))))..................))))))))))))))).))).)))) ( -41.30)
>DroSim_CAF1 25342 120 + 1
GCUGAGGCCGCCUUCAAAUGCAGCUGCCAGGAGUUCGUGCAUCCUUGGACCUCCAGCUGCGCCUGUGCGACGGCUGGAAUGCUAUUAUCCCUAAUCCCUGGCACAUUUAAGACCUAUAGU
(((((((....(((.(((((....(((((((.(((((........))))).(((((((((((....))).))))))))..................))))))))))))))).))).)))) ( -39.90)
>DroEre_CAF1 35135 120 + 1
ACUGAAGUCGCCUUCAAAUGCAGCUGCCAGGAGUUCGUCCAUCCUUGGACUUCGAGCUGCGCCUGCGCGACGGCUGGGAUGCUAUUAUCGCUAAUUCCUGGCACAUUUAAGACUUAUAGU
(((((((((((........)).(.(((((((((((.(((((....)))))(((.((((((((....))).))))).))).............))))))))))))......))))).)))) ( -45.60)
>DroYak_CAF1 26925 120 + 1
GCUGAGAUCGCCUUUAAAUGCAGCUGCCAGGAGUUCGCCCAUCCUUGGACGUCGAGCUGCGCCUGCGCGACGGCUGGCAUGCUUUUAUCCCUAAUCCCUGGCACAUUUAAGACUUAUAGU
..((((.((....(((((((....(((((((.(((((........)))))(((.((((((((....))).))))))))..................)))))))))))))))))))).... ( -34.40)
>consensus
GCUGAGGCCGCCUUCAAAUGCAGCUGCCAGGAGUUCGUGCAUCCUUGGACCUCCAGCUGCGCCUGUGCGACGGCUGGAAUGCUAUUAUCCCUAAUCCCUGGCACAUUUAAGACCUAUAGU
(((((((.(((........)).(.(((((((.(((((........))))).(((((((((((....))).))))))))..................))))))))......).))).)))) (-34.62 = -34.74 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:45 2006