| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,331,837 – 4,331,935 |
| Length | 98 |
| Max. P | 0.637703 |
| Location | 4,331,837 – 4,331,935 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.82 |
| Mean single sequence MFE | -16.37 |
| Consensus MFE | -11.64 |
| Energy contribution | -11.62 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.637703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4331837 98 + 27905053 ACACGAGGCUGAUUUAAUUUCCUUUCCACCUGCAACACACUCACA-------CACACAGGCACUCAC--UGCCGUGCAACGGACACCACCGCAAGUCUCAACACUUA ....((((((((.......)).........(((............-------..(((.((((.....--)))))))....((......)))))))))))........ ( -18.40) >DroPse_CAF1 11787 107 + 1 GCACGAAGCUGAUUUAAUUUCCUUACCACCUGCAACGCACACUCACAUGCGACAUACAGGUAUAUACGUAUAUAUGCAACGGACACCACCGCAAGUCUCAACACUUA ....((..((.........(((.....(((((...((((........)))).....)))))......(((....)))...)))..........))..))........ ( -15.81) >DroSec_CAF1 19121 98 + 1 ACACGAGGCUGAUUUAAUUUCCUUUCCACCUGCAACAAACUCACA-------CACACAGGCACUCAC--UACCGUGCAACGGACACCACCGCAAGUCUCAACACUUA ....((((((((.......)).........(((............-------.......((((....--....))))...((......)))))))))))........ ( -16.40) >DroSim_CAF1 8182 98 + 1 ACACGAGGCUGAUUUAAUUUCCUUUCCACCUGCAACAAACUCACA-------CACACAGGCACUCAC--UGCCGUGCAACGGACACCACCGCAAGUCUCAACACUUA ....((((((((.......)).........(((............-------..(((.((((.....--)))))))....((......)))))))))))........ ( -18.40) >DroAna_CAF1 6865 88 + 1 ACACGAGGCUGAUUUAAUUUCCUUUCCACCUGUACCA-----------------CACAUGCACGCAC--ACCCUGGCAACGGACACCACCGCAAGUCUCAACACUUA ....((((((....................(((....-----------------.)))(((..((..--......))...((......)))))))))))........ ( -13.40) >DroPer_CAF1 8339 107 + 1 GCACGAAGCUGAUUUAAUUUCCUUACCACCUGCAACGCACACACACAUGCGACAUACAGGUAUAUACGUAUAUAUGCAACGGACACCACCGCAAGUCUCAACACUUA ....((..((.........(((.....(((((...((((........)))).....)))))......(((....)))...)))..........))..))........ ( -15.81) >consensus ACACGAGGCUGAUUUAAUUUCCUUUCCACCUGCAACACACUCACA_______CACACAGGCACUCAC__AGCCGUGCAACGGACACCACCGCAAGUCUCAACACUUA ....((((((((.......)).........(((..........................((((..........))))...((......)))))))))))........ (-11.64 = -11.62 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:41 2006