Locus 1516

Sequence ID 3R_DroMel_CAF1
Location 4,326,783 – 4,326,890
Length 107
Max. P 0.806347
window2522

overview

Window 2

Location 4,326,783 – 4,326,890
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.41
Mean single sequence MFE -26.91
Consensus MFE -14.99
Energy contribution -15.47
Covariance contribution 0.47
Combinations/Pair 1.08
Mean z-score -2.00
Structure conservation index 0.56
SVM decision value 0.63
SVM RNA-class probability 0.806347
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4326783 107 - 27905053
CAGUUGGUGUUGCAAUUAAAAGUGGAAUUCUUUUUCAUU----------AUUGCUGUUUGUCGGAAAACAGGCAAAUAUUAAUAAAGCAAACGCGCUCACAUGC--CCC-CAACCAUCCA
..(((((((((((.........(((((.....)))))((----------((((.((((((((........)))))))).)))))).)).)))))((......))--...-))))...... ( -24.60)
>DroPse_CAF1 5843 117 - 1
CAGUUGAUGUUGCAAUUAAGAGUGGAAUUCUUUUUCAUUUGGUGCUUGUGUUUCUGUUUGCCCAAAAACAGGCAAAUAUUAAUAAAGCAAGCUCCCACAGAGAGAUCUCUC-UCCCUC--
.(((((......)))))..((((((((.....))))))))((.(((((((((..((((((((........))))))))..)))...)))))).))....(((((....)))-))....-- ( -33.30)
>DroSec_CAF1 14119 106 - 1
CAGUUGGUGUUGCAAUUAAGAGUGGAAUUCUUUUUCAUU----------AUUGCUGUUUGUCGGAAAACAGGCAAAUAUUAAUAAAGCAAACGCGCACAUAUAC--GCC-C-ACCAUCCA
....(((((((((.........(((((.....)))))((----------((((.((((((((........)))))))).)))))).))))..(((........)--)).-)-)))).... ( -25.50)
>DroEre_CAF1 14240 106 - 1
CAGUUGGUGUUGCAAUUAAGAGUGGAAUUCUUUUCCAUU----------AUUGCUGUUUGUCGGAAAACAGGCAAAUAUUAAUAAAGCAAAUGCGCACACAUAC--CCC-C-ACCAUCCA
....(((((((((.........(((((.....)))))((----------((((.((((((((........)))))))).)))))).))))(((......)))..--...-)-)))).... ( -25.40)
>DroAna_CAF1 1881 100 - 1
CGGUUGGCGUUGCAAUUACGAGAGGAAUUCUUUUUCAUU----------AUUGCUGC------AAAAACAGGCAAAUAUUAAUAAAACACA-GCCCACACGCAU--CCCGC-UCCGCCCA
(((...((((.(((((...((((((....))))))....----------)))))...------.......(((..................-)))...))))..--.))).-........ ( -18.27)
>DroPer_CAF1 2354 118 - 1
CAGUUGAUGUUGCAAUUAAGAGUGGAAUUCUUUUUCAUUUGGUGCUUGUGUUUCUGUUUGCCCAAAAACAGGCAAAUAUUAAUAAAGCAAGCUCCCACAGAGAGAUCUCCC-UCCCUCA-
.(((((......)))))..(((.(((..(((((((.....((.(((((((((..((((((((........))))))))..)))...)))))).))...)))))))..))))-)).....- ( -34.40)
>consensus
CAGUUGGUGUUGCAAUUAAGAGUGGAAUUCUUUUUCAUU__________AUUGCUGUUUGUCGAAAAACAGGCAAAUAUUAAUAAAGCAAACGCCCACACAUAC__CCC_C_ACCAUCCA
..(((((((((((.......(((((((.....)))))))..............((((((......)))))))).)))))))))..................................... (-14.99 = -15.47 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:37 2006