Locus 1515

Sequence ID 3R_DroMel_CAF1
Location 4,325,149 – 4,325,245
Length 96
Max. P 0.685180
window2521

overview

Window 1

Location 4,325,149 – 4,325,245
Length 96
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 78.56
Mean single sequence MFE -31.37
Consensus MFE -14.36
Energy contribution -15.42
Covariance contribution 1.06
Combinations/Pair 1.07
Mean z-score -2.26
Structure conservation index 0.46
SVM decision value 0.32
SVM RNA-class probability 0.685180
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4325149 96 - 27905053
UACCGAAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUACAGAAUUUACUGCCAU-----ACUGGCAGAGGCAUUGCAACUGCUGUUGGUAGC------AGCA
..............---------....(((((.....((((....)))).............((((..-----...))))))))).........(((((.....))------))). ( -27.10)
>DroPse_CAF1 4030 95 - 1
GGUC-AGGGCGCAAUCCCUUCUGUAAAGCCUGAAAUUAGCAAGAGCUCUUUGCGGAAUUUACUGCCGG------------GAGGAGCUGCAGCUGCAGCUGC-AGC------AUC-
..((-(((..(((........)))....))))).....((...((((((((.(((.........))).------------))))))))(((((....)))))-.))------...- ( -33.80)
>DroSec_CAF1 12526 100 - 1
UACC-AAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACUGCCAUACUAUACUGGCAGAGGCACUGGAACUGCUGUUGCUAGC------AGCA
..((-(..((....---------((((..((((((...((....))..)))).))..))))((((((........)))))).))...)))....(((((.....))------))). ( -28.70)
>DroSim_CAF1 1501 100 - 1
UACC-AAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACAGCCAUACUAUACUGGCAGAGGCAUUGGAACUGCUGUUGCUAGC------AGCA
..((-(((......---------....(((((.....((((....))))..............((((........)))).))))))))))....(((((.....))------))). ( -28.80)
>DroEre_CAF1 12570 96 - 1
UACC-AAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACUGCCAUG-------GGCAGAGGCAUUGGAACUGCUGUUGGUAGCAG---CAGCA
..((-(((......---------....(((((......((....))((((.((((......))))...)-------))).))))))))))....(((((((....)))---)))). ( -35.40)
>DroYak_CAF1 4017 99 - 1
UACC-AAUCCGAAA---------UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACUGCCAUG-------GUCAGUGGCAUUGGAACUGCUGUUGGUAGCAGCAGCAGCA
....-..(((((..---------((((..((((((...((....))..)))).))..)))).((((((.-------....))))))))))).(((((((((....))))))))).. ( -34.40)
>consensus
UACC_AAUCCGAAA_________UAAAGCCUCAAAUUAGCGCGAGCGCUUUGCAGAAUUUACUGCCAU________GGCAGAGGCAUUGGAACUGCUGUUGCUAGC______AGCA
...........................(((((......((....)).....((((......))))...............))))).........((((....)))).......... (-14.36 = -15.42 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:36 2006