Locus 1514

Sequence ID 3R_DroMel_CAF1
Location 4,324,429 – 4,324,546
Length 117
Max. P 0.770046
window2520

overview

Window 0

Location 4,324,429 – 4,324,546
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.25
Mean single sequence MFE -35.98
Consensus MFE -29.00
Energy contribution -29.52
Covariance contribution 0.52
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.81
SVM decision value 0.53
SVM RNA-class probability 0.770046
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4324429 117 - 27905053
UUUGGUGGCCUCGUUUGUUUUGCUUUGGAGGCUGCCACCAGGUCAGUGUUCCAGCAGUUGUUAGCUCUGCUGCAUUUU---CCCAGAUGCUGACGAGAUGGGUCAUAAAAAAAAUGUUUU
....((((((.(((((...(((((..(((.((((((....)).)))).))).))))).(((((((((((.........---..)))).)))))))))))))))))).............. ( -36.70)
>DroSec_CAF1 11816 108 - 1
UUUGGUGGCCUCGUUUGUUUUGCUUUGGAGGCUGCCACCAGGUCAGUGUUCCAGCAG---------CUGCUGCAUUUU---CCCAGAUGUUGACGAGAUGGGUCAUAAAAAAAAUGUUUU
....(((((((..((((((..(((((((..((((((....)).))))....((((..---------..))))......---.))))).)).))))))..))))))).............. ( -30.90)
>DroSim_CAF1 781 116 - 1
UUUGGUGGCCUCGUUUGUUUUGCUUUGGAGGCUGCCACCAGGUCAGUGUUCCGACAGUUGUUAGCUCUGCUGCAUUUU---CCCAGAUGCUGACGAGAUGGGUCAUAAAA-AAAUGUUUU
....((((((.(((((.....(((((((((((((((....)).)))).)))))).)))(((((((((((.........---..)))).))))))))))))))))))....-......... ( -35.20)
>DroEre_CAF1 11854 114 - 1
UUUGCUGGCCUCGUUUGUUUUGCUUUGGGUGCUGCCACCAGGUCAGUGUUCCUGCAGUUGUUAACUCUGCUGCAUUUG---CCCAGAUACUGACGAGAUGGGCCAUAA---AAAUGUUUU
((((.((((((..((((((....(((((((((((((....)).)))).....((((((.(......).))))))...)---))))))....))))))..)))))))))---)........ ( -38.70)
>DroYak_CAF1 3269 119 - 1
UUUGGUGGCCUCGUUUGUUUUGCUUUGGGGGCUGCCACCAGGUCAGUGUUCCAGCAGUUGUUAACUCUGCUGCAUUUGCUGCCGAGAUACUGACGAGAUGGGUCAUAAAA-AAAUGUUUU
..(((..(((((....(.....)....)))))..)))(((.((((((((..(.((((((((..........)))...))))).)..))))))))....))).........-......... ( -38.40)
>consensus
UUUGGUGGCCUCGUUUGUUUUGCUUUGGAGGCUGCCACCAGGUCAGUGUUCCAGCAGUUGUUAACUCUGCUGCAUUUU___CCCAGAUGCUGACGAGAUGGGUCAUAAAA_AAAUGUUUU
....(((((((..((((((....(((((..((((((....)).))))....((((((.........))))))..........)))))....))))))..))))))).............. (-29.00 = -29.52 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:35 2006