Locus 1511

Sequence ID 3R_DroMel_CAF1
Location 4,322,160 – 4,322,280
Length 120
Max. P 0.741693
window2516

overview

Window 6

Location 4,322,160 – 4,322,280
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.83
Mean single sequence MFE -22.50
Consensus MFE -17.80
Energy contribution -17.76
Covariance contribution -0.04
Combinations/Pair 1.12
Mean z-score -1.63
Structure conservation index 0.79
SVM decision value 0.45
SVM RNA-class probability 0.741693
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4322160 120 - 27905053
CUGCCUUCACUUUCCGACCCGUUCCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGAA
......(((((....((.....)).....(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............)))))))))). ( -20.60)
>DroPse_CAF1 213 111 - 1
------UCGCUGGUGGUUG---CCCCUUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCACGCUCGACAGUUUUCUUCGCUUUUUGCGCAGUGGA
------.(((.((.((...---))))...)))....((((((((((..(((.((((((.....))))))...........((((......).)))........)))...)).)))))))) ( -28.50)
>DroSec_CAF1 9515 120 - 1
CUCCCUUCACUUUCCGUCCCGUUCCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGAA
......(((((...((...))........(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............)))))))))). ( -20.10)
>DroEre_CAF1 9520 120 - 1
CUGCCUCCACUUUUCGCCCCGUUCCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGAA
.........................(((.(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............))))).))).. ( -19.70)
>DroYak_CAF1 926 120 - 1
CUGCCUCCACUUUACGUCCCGUUGCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGGA
.....((((((..(((...))).......(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............))))))))))) ( -23.60)
>consensus
CUGCCUUCACUUUCCGUCCCGUUCCCAUCGCGCAUUUCCGCUGCCAUUAGCCGACAAACUUCAUUUGUCAUCUCAUUUUUCUGCUCGCUCGACAGUUUUCUUCCCUUUUUGCGCAGUGAA
......(((((....(........)....(((((.....((((....)))).((((((.....))))))...........(((.((....)))))..............)))))))))). (-17.80 = -17.76 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:31 2006