Locus 1509

Sequence ID 3R_DroMel_CAF1
Location 4,320,979 – 4,321,099
Length 120
Max. P 0.654715
window2512

overview

Window 2

Location 4,320,979 – 4,321,099
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -30.43
Consensus MFE -30.20
Energy contribution -30.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.99
SVM decision value 0.25
SVM RNA-class probability 0.654715
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4320979 120 - 27905053
ACACUUUCCCGCCUCUUAGCGGGCAAUCAAUUCAUACGGAUGUUGCCCCGGCGAAAAACCAAUUAAAUUUUAUAAGCCCUACAACUUGCAUAGAACGAUUUCGCCUGCCCCAGGGGUGCA
.........(((((((..(((((((((..((((....))))))))))).(((((((......(((.......)))((..........)).........))))))).))...))))))).. ( -30.20)
>DroSec_CAF1 8345 120 - 1
ACACUUUGCCGCCUCUUAGCGGGCAAUCAAUUCAUACGGAUGUUGCCCCGGCGAAAAACCAAUUAAAUUUUAUAAGCCCUACAACUUGCAUAGAACGAUUUCGCCUGCCCCAGGGGUGCA
......(((.((((((..(((((((((..((((....))))))))))).(((((((......(((.......)))((..........)).........))))))).))...))))))))) ( -30.90)
>DroEre_CAF1 8350 120 - 1
ACACUUUCCCGCCUCUUAGCGGGCAAUCAAUUCAUACGGAUGUUGCCCCGGCGAAAAACCAAUUAAAUUUUAUAAGCCCUACAACUUGCAUAGAACCAUUUCGCCUGCCCCAGGGGUGCA
.........(((((((..(((((((((..((((....))))))))))).(((((((......(((.......)))((..........)).........))))))).))...))))))).. ( -30.20)
>consensus
ACACUUUCCCGCCUCUUAGCGGGCAAUCAAUUCAUACGGAUGUUGCCCCGGCGAAAAACCAAUUAAAUUUUAUAAGCCCUACAACUUGCAUAGAACGAUUUCGCCUGCCCCAGGGGUGCA
.........(((((((..(((((((((..((((....))))))))))).(((((((......(((.......)))((..........)).........))))))).))...))))))).. (-30.20 = -30.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:27 2006