Locus 1508

Sequence ID 3R_DroMel_CAF1
Location 4,320,481 – 4,320,593
Length 112
Max. P 0.977465
window2511

overview

Window 1

Location 4,320,481 – 4,320,593
Length 112
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.66
Mean single sequence MFE -37.67
Consensus MFE -29.73
Energy contribution -30.40
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -3.20
Structure conservation index 0.79
SVM decision value 1.79
SVM RNA-class probability 0.977465
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4320481 112 + 27905053
GCUUUCGGUGGCCGAGAAAGUAUUUACAACAUAUGCAAGUUGGACGUACAACGGGGCGUAUGAUGAAUCCAUAAGGCC--------AUAGGGCCAGGAAAAACCAGUGGGGGAGGGGGAG
.((..((.(((...............((.(((((((..((((......))))...))))))).))..(((....((((--------....)))).)))....))).))..))........ ( -34.60)
>DroSec_CAF1 7850 111 + 1
GCUUUCGGUCGCCCAGAAAGUAUUUACAACAUAUGCAAGUUGGACGUACAACGGGGCGUAUGAUGAAUACACAAGGCC--------AUAGGGCCAGGAA-AACCAGGGGGGAGGGGGGAG
.((..(..((.(((.....(((((((...(((((((..((((......))))...))))))).)))))))....((((--------....)))).((..-..)).))).))..)..)).. ( -40.60)
>DroEre_CAF1 7855 109 + 1
GCUUUCGGUGGCCCAGAAAGUAUUUACAACAUAUGCAAGUUGGACGUACAACGGGGCGUAUGAUGAAUACAUAAGGCCAUAAGGCCAUAAGGCCAGGAAAAACCAGGGG-----------
.(((..(((((((......(((((((...(((((((..((((......))))...))))))).)))))))....))))....((((....)))).......)))..)))----------- ( -37.80)
>consensus
GCUUUCGGUGGCCCAGAAAGUAUUUACAACAUAUGCAAGUUGGACGUACAACGGGGCGUAUGAUGAAUACAUAAGGCC________AUAGGGCCAGGAAAAACCAGGGGGG__GGGGGAG
.((..((((..((......(((((((...(((((((..((((......))))...))))))).)))))))....((((............)))).))....))).)..)).......... (-29.73 = -30.40 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:26 2006