| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,319,328 – 4,319,441 |
| Length | 113 |
| Max. P | 0.826711 |
| Location | 4,319,328 – 4,319,441 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.70 |
| Mean single sequence MFE | -38.53 |
| Consensus MFE | -26.09 |
| Energy contribution | -27.10 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.826711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4319328 113 - 27905053 GAUUUCGGGGGGGGGGGGGGGGUUUUGAAACGAGGGACUGGGGAAUGGGUUAUGUGGCCUGGAGCCU-------GCGGUUCCUCAGGCGGUUUGCUAACGAAAUGUCCCUUUGAAACGUU .............(((((((.((((((....((((((((((((..((((((....))))))...)))-------.))))))))).(((.....)))..)))))).)))))))........ ( -40.20) >DroSec_CAF1 6684 102 - 1 GAUUUG-----------UGGGGACAUAAAACGGGGGACUGGGGAAUGGGUUAUGUGGCCUGGAGCCG-------CAGGUACCUCAGGCGGUUUGCUAACGAAAUGUUCCUUUGAAACGUU ..((((-----------((....)))))).(((....)))(((((((..((...((((...((((((-------(..(.....)..)))))))))))..))..))))))).......... ( -32.90) >DroEre_CAF1 6709 106 - 1 GAUUU--------------GGGACAUAAAACGGGGGACUGGGGAAUGGGUUAUGUGGCCUGGAACCGGGAGCUCCCGGUUCCUCAGGCGGUUUGCUAACGAAAUGUCCCUUUGAAACGUU .....--------------(((((((....(((....))).......(((....(.(((((((((((((....)))))))))..)))).)...)))......)))))))........... ( -42.50) >consensus GAUUU_____________GGGGACAUAAAACGGGGGACUGGGGAAUGGGUUAUGUGGCCUGGAGCCG_______CCGGUUCCUCAGGCGGUUUGCUAACGAAAUGUCCCUUUGAAACGUU ...................(((((((.....((((((((((((..((((((....))))))...))........)))))))))).(((.....)))......)))))))........... (-26.09 = -27.10 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:20 2006