Locus 1505

Sequence ID 3R_DroMel_CAF1
Location 4,318,563 – 4,318,683
Length 120
Max. P 0.786679
window2503

overview

Window 3

Location 4,318,563 – 4,318,683
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.91
Mean single sequence MFE -26.67
Consensus MFE -24.96
Energy contribution -24.63
Covariance contribution -0.33
Combinations/Pair 1.10
Mean z-score -1.74
Structure conservation index 0.94
SVM decision value 0.57
SVM RNA-class probability 0.786679
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4318563 120 + 27905053
UAAAUUAAAAUUAACAUUUGGUCACCCCGAGUGGGCCCGUCUGUCCGGCAGUUCUCCGGAUACAAUACACAUACUACGUAUGUAUAUGUGUCAGCCAUCAUGUGAAUUAGUAAAAUUAAA
...(((((......(((((((.....)))))))(((.....(((((((.......)))))))....(((((((.(((....))))))))))..)))..........)))))......... ( -28.40)
>DroSec_CAF1 5947 112 + 1
UAAAUUAAAAUUAACAUUUGGUCACCCCGAAUGGGCCCGUCUGUCCGGCAGUUCUCCGGAUACAAUACACAUACU--------AUAUGUGUGAGCCAUCAUGUGAAUUAGUAAAAUUAAA
...(((((......(((((((.....)))))))(((.....(((((((.......)))))))...((((((((..--------.)))))))).)))..........)))))......... ( -27.70)
>DroEre_CAF1 5948 112 + 1
UAAAUUAAAAUUAACAUUUGGUCACCCCGAAUGGGCCCGCCUGUCCGGCAGUUCUCCGAACACUAAACGCAUACU--------AUAUGUGUGAGCCAUCAUGUGAAUUAGUAAAAUUAAA
...(((((......(((((((.....)))))))(((.((((.....))).((((...)))).....(((((((..--------.)))))))).)))..........)))))......... ( -23.90)
>consensus
UAAAUUAAAAUUAACAUUUGGUCACCCCGAAUGGGCCCGUCUGUCCGGCAGUUCUCCGGAUACAAUACACAUACU________AUAUGUGUGAGCCAUCAUGUGAAUUAGUAAAAUUAAA
...(((((......(((((((.....)))))))(((.....(((((((.......)))))))....(((((((...........)))))))..)))..........)))))......... (-24.96 = -24.63 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:19 2006