| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,315,698 – 4,315,818 |
| Length | 120 |
| Max. P | 0.742018 |
| Location | 4,315,698 – 4,315,818 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 99.44 |
| Mean single sequence MFE | -34.23 |
| Consensus MFE | -34.20 |
| Energy contribution | -34.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.62 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.742018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4315698 120 - 27905053 CUGACCCACUCACAUUGCACACUGUCCUAUGCCAAAAACGCAAAAUCGCUUUGCGCCUGAAAGUAUGCAGCAAAGCGUGAAGCAUGCAAAAGGGCGGCAUACCGAUUGGUGUUUCAAUCC .............((((.((((((((.((((((......(((((.....)))))((((....((((((..((.....))..))))))....))))))))))..)).))))))..)))).. ( -34.20) >DroSec_CAF1 3098 120 - 1 CUGACCCACUCGCAUUGCACACUGUCCUAUGCCAAAAACGCAAAAUCGCUUUGCGCCUGAAAGUAUGCAGCAAAGCGUGAAGCAUGCAAAAGGGCGGCAUACCGAUUGGUGUUUCAAUCC ..((((((.((((...)).........((((((......(((((.....)))))((((....((((((..((.....))..))))))....))))))))))..)).))).)))....... ( -34.30) >DroEre_CAF1 3108 120 - 1 CUGACCCACUCACAUUGCACACUGUCCUAUGCCAAAAACGCAAAAUCGCUUUGCGCCUGAAAGUAUGCAGCAAAGCGUGAAGCAUGCAAAAGGGCGGCAUACCGAUUGGUGUUUCAAUCC .............((((.((((((((.((((((......(((((.....)))))((((....((((((..((.....))..))))))....))))))))))..)).))))))..)))).. ( -34.20) >consensus CUGACCCACUCACAUUGCACACUGUCCUAUGCCAAAAACGCAAAAUCGCUUUGCGCCUGAAAGUAUGCAGCAAAGCGUGAAGCAUGCAAAAGGGCGGCAUACCGAUUGGUGUUUCAAUCC .............((((.((((((((.((((((......(((((.....)))))((((....((((((..((.....))..))))))....))))))))))..)).))))))..)))).. (-34.20 = -34.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:03 2006