Locus 150

Sequence ID 3R_DroMel_CAF1
Location 780,354 – 780,453
Length 99
Max. P 0.985040
window245

overview

Window 5

Location 780,354 – 780,453
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 92.70
Mean single sequence MFE -27.50
Consensus MFE -22.06
Energy contribution -23.26
Covariance contribution 1.20
Combinations/Pair 1.06
Mean z-score -2.47
Structure conservation index 0.80
SVM decision value 1.99
SVM RNA-class probability 0.985040
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 780354 99 + 27905053
UGCUCAAUUACUGUCAUUUGCUACCUGUUUUGUUGUCAAGACUGUAAUUGAUUUUGAUUGCGGCUUAAUAGUCUUUGCGAUCGAGCGUAGGGCUGGUUA
.(((((((((..((((.((((.....((((((....)))))).)))).))))..)))))).)))....((((((((((......))).))))))).... ( -28.20)
>DroSec_CAF1 4781 99 + 1
UGCUCAAUUACUGUCAUUUGCUACCUGUUUUGUUGUCAAGACUGUAAUUGAUUUUGAUUGCGGCUUAAUAGUCUUUGCGAUUGAGCGUAGGGCUGGUUA
.(((((((((..((((.((((.....((((((....)))))).)))).))))..)))))).)))....((((((((((......))).))))))).... ( -28.20)
>DroSim_CAF1 4690 99 + 1
UGCUCAAUUACUGUCAUUUGCUACCUGUUUUGUUGUCAAGACUGUAAUUGAUUUUGAUUGCGGCUUAAUAGUCUUUGCGAUUGAGCGUAGGGCUGGUUA
.(((((((((..((((.((((.....((((((....)))))).)))).))))..)))))).)))....((((((((((......))).))))))).... ( -28.20)
>DroEre_CAF1 3830 95 + 1
UGCUCAAUUACUGUCAUUUGCUACCUGUUUUGUUGUCAAGACUGUAAUUGAAUUUGAUUGGGGCCUAAUAGGUUUUGUGUUUGAGCGUAGGG----CUA
..((((((((...(((.((((.....((((((....)))))).)))).)))...))))))))((((..((.((((.......)))).)))))----).. ( -25.10)
>DroYak_CAF1 5279 95 + 1
UGCUCAAUUACUGUCAUUUGCUACCUGUUUUGUCGUCAAGACUGUAAUUGAUUUUGAUUGGGGCUUAAUGGUCUUUGUGAUUGAGCGUAGGG----UUA
.((((((((((.((((.((((.....((((((....)))))).)))).)))).......((((((....)))))).))))))))))......----... ( -27.80)
>consensus
UGCUCAAUUACUGUCAUUUGCUACCUGUUUUGUUGUCAAGACUGUAAUUGAUUUUGAUUGCGGCUUAAUAGUCUUUGCGAUUGAGCGUAGGGCUGGUUA
.(((((((((..((((.((((.....((((((....)))))).)))).))))..)))))).)))....((((((((((......))).))))))).... (-22.06 = -23.26 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:40 2006