Locus 1499

Sequence ID 3R_DroMel_CAF1
Location 4,314,021 – 4,314,141
Length 120
Max. P 0.836848
window2485

overview

Window 5

Location 4,314,021 – 4,314,141
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -35.17
Consensus MFE -33.44
Energy contribution -33.00
Covariance contribution -0.44
Combinations/Pair 1.05
Mean z-score -2.03
Structure conservation index 0.95
SVM decision value 0.74
SVM RNA-class probability 0.836848
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4314021 120 - 27905053
ACCGACAGCAAUUUGCCAGAGUACGUCUUGUGCUUGCUGCUUGAGUGAAUUUAAAUUUACUCAGCCAGUGUUUUUCGCCCUUCAAUGGCAAUGCAAUGAGCUGGAGAAACUCCUUCCAUU
.......(((..((((((((((((.....))))))((((.((((((((((....)))))))))).))))................)))))))))((((.(..((((...))))..))))) ( -36.10)
>DroSec_CAF1 1456 120 - 1
ACCGACAGCAAUUUGCCAGAGUACGUCUUGCGCUUGCUGCUUGAGUGGAUUUAAAUUUACUCAGCCAGUGUUUUUCGCCCUUCAAUGGCAAUGCAAUGAGCUGGAGAAACUCCUUCCAUU
.......(((..(((((((((..((....(((((.(((....((((((((....))))))))))).)))))....))..)))...)))))))))((((.(..((((...))))..))))) ( -34.70)
>DroEre_CAF1 1432 120 - 1
ACCGACAGCAAUUUGCCAGAGUACGUCUUGCGCUUGCUGCUUGAGUGGAUUUAAAUUUACUCAGCCAGUGUUUUUCGCCCUUCAAUGGCAAUGCAAUGAGCUGGAGAAACUCCUUCCAUU
.......(((..(((((((((..((....(((((.(((....((((((((....))))))))))).)))))....))..)))...)))))))))((((.(..((((...))))..))))) ( -34.70)
>consensus
ACCGACAGCAAUUUGCCAGAGUACGUCUUGCGCUUGCUGCUUGAGUGGAUUUAAAUUUACUCAGCCAGUGUUUUUCGCCCUUCAAUGGCAAUGCAAUGAGCUGGAGAAACUCCUUCCAUU
.......(((..(((((((((..((....(((((.(((....((((((((....))))))))))).)))))....))..)))...)))))))))((((.(..((((...))))..))))) (-33.44 = -33.00 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:02 2006