| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,313,503 – 4,313,623 |
| Length | 120 |
| Max. P | 0.729868 |
| Location | 4,313,503 – 4,313,623 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 99.44 |
| Mean single sequence MFE | -36.10 |
| Consensus MFE | -36.10 |
| Energy contribution | -36.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4313503 120 + 27905053 CAAAAAUUGCAUUUCCGAGCCCAAAAGAGGAUCAGGGCCAACGCAGCAGUGUACCUGGAGCUGAGUUCGGCUUUUGUUUGCGCAUCAAAUUGCAAUUGCAAUUGCUUUGUGUGCAUACAU ..............((((((((......)).((((..(((((((....))))...)))..))))))))))....(((.(((((((..((((((....)))))).....))))))).))). ( -36.10) >DroSec_CAF1 936 120 + 1 CAAAAAUUGCAUUUCCGAGCCCAAAAGAGGAUCAGGGCCAACGCAGCAGUGUACCUGGAGCUGAGUUCGGCUUUUGUUUGCGCAUCAAAUUGCAAUUGCAAUUGCUUUGUGUGCAUACAU ..............((((((((......)).((((..(((((((....))))...)))..))))))))))....(((.(((((((..((((((....)))))).....))))))).))). ( -36.10) >DroEre_CAF1 952 120 + 1 CAAAAAUUGCAUUUCCGAGCCCAAAAGAGGAUCAGGGCCAACGCAGCAGUGUUCCUGGAGCUGAGUUCGGCUUUUGUUUGCGCAUCAAAUUGCAAUUGCAAUUGCUUUGUGUGCAUACAU ..............((((((((......)).((((..(((((((....))))...)))..))))))))))....(((.(((((((..((((((....)))))).....))))))).))). ( -36.10) >consensus CAAAAAUUGCAUUUCCGAGCCCAAAAGAGGAUCAGGGCCAACGCAGCAGUGUACCUGGAGCUGAGUUCGGCUUUUGUUUGCGCAUCAAAUUGCAAUUGCAAUUGCUUUGUGUGCAUACAU ..............((((((((......)).((((..(((((((....))))...)))..))))))))))....(((.(((((((..((((((....)))))).....))))))).))). (-36.10 = -36.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:01 2006