| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,312,951 – 4,313,071 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 4,312,951 – 4,313,071 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.72 |
| Mean single sequence MFE | -35.95 |
| Consensus MFE | -30.91 |
| Energy contribution | -30.80 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.86 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4312951 120 - 27905053 UAAGGCGAAUUCUCGCAGCUAAAGCGCAAAAAGCGAAAGCAAAUAUCGCCAUGCGGCUGCGGUGUUCGCUGCGUAAAACUUAAAUAAGACAAGCAUCCCGCUGCCAUCUUUCCCCUGAGU ...(((((((.(.(((((((...(((......((....))......))).....)))))))).))))))).......(((((...((((..(((.....)))....)))).....))))) ( -35.00) >DroSec_CAF1 388 120 - 1 UAAGGCGAAUUCUCGCUGCUAAAGCGCAAAAAGCGAAAGCAAAUAUCGCCAUGCGGCUGCGGCGUUGGCUGCGUAAAACUUAAAUAAGACAACCAUCCCGCUGCCAUUUUUCCCCUGAGU ...(((((.....((((.....))))......((....)).....)))))....(((.((((.(.(((.(((...............).)).))).))))).)))............... ( -35.66) >DroEre_CAF1 416 119 - 1 UAAGGCGAAUUCUCGCAGCUAAAGCGCAAAAAGCGAAAGCAAAUAUCGUCAUGCGGCUGCGGCGGUGGCAGCGUAAAACUUAAAUAAGACAAGCAUCCCGCUGCCAU-UUUCCCCUGAGC ..(((.(((...((((((((...(((......((....))......))).....)))))))).((((((((((..(..(((.........)))..)..)))))))))-)))).))).... ( -37.20) >consensus UAAGGCGAAUUCUCGCAGCUAAAGCGCAAAAAGCGAAAGCAAAUAUCGCCAUGCGGCUGCGGCGUUGGCUGCGUAAAACUUAAAUAAGACAAGCAUCCCGCUGCCAU_UUUCCCCUGAGU ...(((((......((.((....)))).....((....)).....)))))..(((((.(((((....)))))......(((....)))...........)))))................ (-30.91 = -30.80 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:58 2006