| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,312,591 – 4,312,711 |
| Length | 120 |
| Max. P | 0.683551 |
| Location | 4,312,591 – 4,312,711 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.39 |
| Mean single sequence MFE | -36.29 |
| Consensus MFE | -31.01 |
| Energy contribution | -31.34 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4312591 120 + 27905053 ACAGCCAACAGCCCAGAAGCCAAGAGGCAACAAAAAGCGGCAAGCAACAUCAACAGCCGCGGCAAUCUUCAUAAGUUGCGCAUACGCCCCGUAUGCCGGUCGCCCUUCAGACCACAGCUG ...(((............(((....)))........(((((..............))))))))..........(((((.(((((((...))))))).((((........)))).))))). ( -38.04) >DroSec_CAF1 29 119 + 1 -CAGCCAACAGCCCAGAAGCCAAGAGGCAACAAAAAGCGGCAAGCAACAUCAACAGCCGCGGCAAUCUUCAUAAGUUGCGCAUACGCCCCGUAUGCCGGGCGCCCUUCAGACCACAGCUG -((((.....((((....(((....)))........(((((..............))))).(((((........)))))(((((((...))))))).))))...(....)......)))) ( -35.54) >DroEre_CAF1 57 119 + 1 ACAUCCAACAG-CCAGAAGCCAAGAGGCAACAAAAAGCGGCGAGCAACAUCAACAGCCGCGGCAAUCUUCAUAAGUUGCGCAUACGCCCCGUAUGCCGGCCGCCCUUUAGACCACAGCUG ........(((-(.....(((....))).....((((.(((((......))....((((..(((((........)))))(((((((...))))))))))).)))))))........)))) ( -35.30) >consensus ACAGCCAACAGCCCAGAAGCCAAGAGGCAACAAAAAGCGGCAAGCAACAUCAACAGCCGCGGCAAUCUUCAUAAGUUGCGCAUACGCCCCGUAUGCCGGCCGCCCUUCAGACCACAGCUG ...(((............(((....)))........(((((..............))))))))..........(((((.(((((((...))))))).((.(........).)).))))). (-31.01 = -31.34 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:57 2006