| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,304,726 – 4,304,833 |
| Length | 107 |
| Max. P | 0.647940 |
| Location | 4,304,726 – 4,304,833 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 94.05 |
| Mean single sequence MFE | -22.57 |
| Consensus MFE | -21.37 |
| Energy contribution | -21.37 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4304726 107 - 27905053 GGACUUUCACCCACAUUGGACGCAGCGGCGCCAAGAUCGCUUCCAUUGCACAUUUUGGCAUUCGACUCGCUUUUCGCCCCUCCUUCCUUUUUGCAUCAGUCUCU------CUC (((((......((.(..(((.(.((.(((((((((((.((.......))..))))))))....((........))))).)).).)))..).))....)))))..------... ( -23.90) >DroSec_CAF1 105910 110 - 1 GGACUUUCACCCACAAUGGACGCAGCGGCGCCAAGAUCGCUUCCACUGCACAUUUUGGCAUUCGACUCGCUU-UCGCCCCUCCUUCCUUUUUGCAUCAAUCUCUCUC--UCUC ((........)).(((.(((.(.((.(((((((((((.((.......))..))))))))....((.......-))))).)).).)))...)))..............--.... ( -21.90) >DroSim_CAF1 106505 112 - 1 GGACUUUCACCCACAAUGGACGCAGCGGCGCCAAGAUCGCUUCCACUGCACAUUUUGGCAUUCGACUCGCUU-UCGCCCCUCCUUCCUUUUUGCAUCAAUCUCUCUCUCUCUC ((........)).(((.(((.(.((.(((((((((((.((.......))..))))))))....((.......-))))).)).).)))...))).................... ( -21.90) >consensus GGACUUUCACCCACAAUGGACGCAGCGGCGCCAAGAUCGCUUCCACUGCACAUUUUGGCAUUCGACUCGCUU_UCGCCCCUCCUUCCUUUUUGCAUCAAUCUCUCUC__UCUC ((........)).....(((.(.((.(((((((((((.((.......))..))))))))....((........))))).)).).))).......................... (-21.37 = -21.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:56 2006