Locus 1490

Sequence ID 3R_DroMel_CAF1
Location 4,299,135 – 4,299,233
Length 98
Max. P 0.895576
window2474

overview

Window 4

Location 4,299,135 – 4,299,233
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.41
Mean single sequence MFE -22.70
Consensus MFE -13.70
Energy contribution -15.29
Covariance contribution 1.59
Combinations/Pair 1.27
Mean z-score -2.85
Structure conservation index 0.60
SVM decision value 0.99
SVM RNA-class probability 0.895576
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4299135 98 - 27905053
UUUAACUUGCAUUGCCGC--CUCAAACAUU--GAUGGCAAUCAAAUGCGAGUUGGAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA
(((((((((((((...((--((((.....)--)).))).....)))))))))))))......((((((((((((((.......)))))).)))))))).... ( -26.80)
>DroVir_CAF1 144931 81 - 1
--------------GGUCUGCUCAAGC-UGGGUGCCGCAAUCAAAUGC------GAGUCAAAUGUCUUAUGAAUUUCUACUCAAAAAUUCAUUAGCCGCAAA
--------------(((..((((....-.)))))))(((......)))------........(((((.((((((((........)))))))).))..))).. ( -14.60)
>DroSec_CAF1 100337 98 - 1
UUUAACUUGCAUUGCCUC--UACAAACGUU--GAUGGCAAUCAAAUGCGAGUUGAAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA
((((((((((((((((((--.((....)).--)).)))).....))))))))))))......((((((((((((((.......)))))).)))))))).... ( -26.50)
>DroSim_CAF1 100950 98 - 1
UUUAACUGGCAUUGCCUC--UACAAACGUU--GAUGGCAAUCAAAUGCGAGUUGGAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA
(((((((.((((((((((--.((....)).--)).)))).....)))).)))))))......((((((((((((((.......)))))).)))))))).... ( -24.40)
>DroEre_CAF1 103632 95 - 1
UUUAAUUUGCAUUGUCU-----CAAACGUU--GAUGGCAAUCAAAUGCGAGUCGCAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA
....(((((.(((((((-----((.....)--)).)))))))))))(((...))).......((((((((((((((.......)))))).)))))))).... ( -18.50)
>DroYak_CAF1 103847 98 - 1
UUCAAUUUGCAUUGCCUC--UUCAAACGUU--GAUGGCAAUCAAAUGCGAGUUGGAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA
((((((((((((((((..--.(((.....)--)).)))).....))))))))))))......((((((((((((((.......)))))).)))))))).... ( -25.40)
>consensus
UUUAACUUGCAUUGCCUC__UUCAAACGUU__GAUGGCAAUCAAAUGCGAGUUGGAGUCAAAUGUCUAAUAAUUUUCAGCUUAAAAAUUCAUUAGAUACAAA
((((((((((((((((...................)))).....))))))))))))......((((((((((((((.......)))))).)))))))).... (-13.70 = -15.29 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:51 2006