Locus 1487

Sequence ID 3R_DroMel_CAF1
Location 4,296,093 – 4,296,183
Length 90
Max. P 0.500000
window2471

overview

Window 1

Location 4,296,093 – 4,296,183
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 88.89
Mean single sequence MFE -19.53
Consensus MFE -14.07
Energy contribution -15.40
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.72
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4296093 90 - 27905053
UGGCAUUAGCCAAUGAGCCCCAUUGGAUACCCCGGAUCCCCCUGAUCCCCUUGGUUUCUGUACCACCAAAACCACCCAAUAGCCCACCGC
((((....)))).((.((...(((((.......(((((.....)))))...((((((.((......)))))))).))))).)).)).... ( -21.20)
>DroSec_CAF1 97323 90 - 1
UGGCAUUAGCCAAUGAGCCCCAUUGGAUACCCCGGAUCUCCCGGAUCCCCUUGGUUUCUGUACCACCAAAACCAGCCAACAACCCACCGC
((((.....((((((.....)))))).......(((((.....)))))...((((((.((......))))))))))))............ ( -23.90)
>DroSim_CAF1 97927 81 - 1
UGGCCUUAGCCAAUGAGCCCCAUUGGAUACCCCG---------GAUCCCCUUGGUUUCUGUACCACCAAAACCACCCAACAAACCACCGC
.((......((((((.....)))))).....))(---------(....)).((((((.((......))))))))................ ( -13.50)
>consensus
UGGCAUUAGCCAAUGAGCCCCAUUGGAUACCCCGGAUC_CCC_GAUCCCCUUGGUUUCUGUACCACCAAAACCACCCAACAACCCACCGC
.((......((((((.....)))))).....))(((((.....)))))...((((((.((......))))))))................ (-14.07 = -15.40 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:48 2006